Pseudomonas viridiflava LMCA8, RT94_RS26025
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_67, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCACCACCCCGCTGATGACCAACGCGATCAAGGTCAACCTGCCCAAGACCGATTCGGTCGCCCCGGCCGAGAAGAAGGATCCGGTGGTGGTCAGCGTC GACCAGAGCGGCAAGTTCTTCCTCGCCAAATCGGAAATCGCCCCCGAGCTGCTGGAGAAAAGCCTGCAGGACGAGAAGGCCAAGGATCCGGACATCCGTG TCCAGTTGCAGGCCGATACCGACGTGAACTATGGCCAGGTGGCCAAGGCCATGGCGTCCATCGAACGCTCGGGCATCACGAAGATTTCCGTCATGACGGC CAAATGAATTGAGGGTTTCGCCCCGGCGAAACCCGCTGAACCGACTCCCGCCAACACCATCGTCCGTGGGCTGAAAAGCCCCTGGAGGGGAGCGGCTTGC TGGAAACCAACGCAGTGGAACTCCCGCACGGCACAACCGCGCAGGAATAGAGGGCTCACAAGGCCATTTCAATAATGTCTGGACCAAGTCGGAAATAACC
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| DNA Sequence for Gene |
>RT94_RS26025
ATGCTGATGAATCTTCCCGGATACACCCTCAAGCCACTGGCCCTCGCGGTCCGCCGTCATCCTCGCGTGTTGTTGTGCGCTCTGGCCATGGGCATGAGCG GTGCCCATGCGGCCGAGGCCGTCGAAGCGGACACCGCCAGCGAATCCGTCTCCGCTGCCGCCGTCGTGCCTGCCACGACCCAGCTGCAACGCGTTGAAGT GACCGGTTCGGCGATTCGCCGGGTCGATGCCGAAACCGCCGTGCCGATCACCATCCTGCGCGCCGACGACCTGAAGAAACAGGGCGTGACCACCACTCAG GAAATGGTCCAGCGCATTACCGGCAGCCAGTCGATCAACAACAGCGCAGGCTCCATCGGTGCAGGAACAGGCGGAGCATCCTTCGCCGACATGCGCGGTA TTGGCCCGAACAAGACACTGGTGCTGCTCAACGGACGCCGCTTGGCCAACAACGCCATCTCGGGTGTCGGTTCGCCGAACGGCAGTGCCATCGACCTGAA CATGATCCCGTTCGCCGCCATCGATCGGGTTGAAGTCCTGCGTGACGGTGCATCGGCCTTGTACGGCACCGACGCCATTGGCGGCGTGATCAACTTCATC ACCAAGAAGACCCTGACCGATGGATCCCTGACCCTGGGCGGCGAGACACCGACTCACAGTGGCGGCGGCGCGACCAAGGATATGAGCGCCAGCTGGGGCT TCGGTGATCTGGAAGAAGACCGCTTCAACGTGATGGGTGTGGTCAACTACAACAAGCAGCAGAATCTGGACGCCAACGACCGTTCGTTCGCACGGGATTA TGTACCGGGCCGCGGTCTCAACCAGACCTCCGGCACCGCGTACCCCGGCAACTATTTTCAGGGTGACAACTCTTCAAACCCGCTGGGCACCAACTGCTCC GGGCCTAACCTGATCGCCCGCAACGGCATCTGCCGGTTCAGCACCCGCGAGTACATCGACCTGATCCCGCAGACCGAAAAGACCTCGTTCTTCGGCAAGG CCACCGGCAAGCTGGCCGACGACCACAACGTCAGCCTCGAATACTTCTGGGCACGCAACAACAACCACACCGACATTGGGCCGGCCCCACTCACCGGCCT GTCGCTGGATTCGTCGTCGCCGTTCTATCCCGGTAACGGCATCACCCCGGCACCGACCAACTTTACGCTCGACCCCACGCAACCGGTCGACACCGCATGG CGCGAAACAGCCGCCGGACCTCGCGGTTCAAGTGACCAGAACACCAGCCAGCGCTTTCTGCTGAACTTCGACGGTCTGGTCGGCGGTTGGGATTACAACG TCGGCGCTTCGTACAACCAGAACAAGGTGCTATCCACCCTTACTGACGGCTACGTCAGTGACGCTGCGATGATCAATGGTCTGGCCAATGGCGTGATCAA CCCGTTCGGGCCGCAGACCGCCGCCGGTCAGGCGCTGATCGATGCCAACGAATACCACGGGCAATACTCCAGCGCTGTGGGCCGTGTGGCAGGAATCGAT GGCCGTATCAGCCGGGAAATCGGCGACTGGTTCGGCGCAGGCCCGGCCGGTCTGGCACTGGGCGGCGAGTACCGCAAAGAGAAGATGCATCAACAGTATG AAGCGTTCGTCAACGACGTCAGCAGCCTCGGGGCGGATGCCGCAGGCAGCGTATCGGGTGAGCGCAGCGTGAAAGCTGAATACGCCGAGTTGAACGTACC GGTGCTGGACAGCCTGGAGCTGAGTGCAGCGGTTCGTCACGACAAATACAGCGACTTCGGCAGCACCACCAACCCCAAGTACTCGTTCCGCTATCAGCCG ATCAAGCAACTGGTGGTCCGTGGTGCTTACAGCGAGGGCTTCCGCGCGCCGTCGCTCTATGAACTGTACGCGCCACGCAGCACTACGTTCAGTCAGGGTT ATTACAACGACCCTGTCTTGTGTGCCGGTGGCACCGTGCAGCCAGGCGGCAATGCCGGTCGTGACTGTGCGCAGCAGTTCCTCAACAACAGTGGCGGCAA CACCGAACTGGCGCCGGAAAAAGCCCGTAACGTGACACTGGGCTTCGTGTATCAGCCAGTCAGCAACCTATCGATGGGGCTGGATTTCTGGTGGATTCAC ATCTCCAACCAGATCCAGTCGTTCCCGGAATCGGCCGTTTTCGATGACCCGAGCACCTACGCCGATCGCTACGTGCGCAACGCTGACGGTTCCATCGCCA ACATCGTGACCGGCAACGCCAACCTGGGCATCGTCAAGACCAGCGGTGTGGACGTCAGCCTCGACTATCGCTTCCCGAACACGCCCTATGGTCAGTTCGG CCTGGGCATGACCGGCACTTACGTGACCCGTTATGACTTCCAGAACATCATTGACGGTCCGTACACCGACAAGGTCGGCGACTTCCAGGGCGATGGCGTG ATTGCGCGCTGGAAACACGTGCTGGTGGGTTCCTGGTCGCTGGGCAACACTCGCGCATCCATCACCAACCGCTTCACCACGGGCTACAACGATTACGACC GCACCACCAACGCGCGTGTCGCCTCGTATGCGCTGTGGGACCTGTCGGTCGGTCATACCTTCGACAAGGTGCTGGATGTCGATGCGGGCCTGCGCAACAT GTTCGACCGCAACCCGCCGTTCTCCAATCAGGCCTACAACTTCCAGTCCGGCTATGACCCACGCTACGCCGACCCGTTGGGCCGCACGCTGTTCGCACGC ATGACGTATCACTTCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GGGTGAAGGCGCGACCCATAACCGCTCCGTGGGTCGCGTCCTGTTTGCGAGCTCGCCCCCTCCGGCCACAGGTTTCATCCACCTTCCCCGGCCGGAGGCC TTTTTCGCCGCATGGCGTCATTCGTGCGTACGAGGATAGCCCCATCATGTCGCGTCAAATCCGTCTTCTGCGACGCCTGCTGCTGGGTGTTGCGGTGTTG TGCACCTGTTGGCAGGTCGCGCTGGCCACGCCGACACATGCCTTGACTGTCTATGGCGAGGCACCGAAATACCCGGCTGGCTTCAAGCACTTCGATTACG TCAACCCGGACGCCCCCAAGGGCGGAACGCTGACCCGGTCAGCCGAAGAAATCGGTCAGTTCAACTACCTCAATCCTTACGTCGATCAAGGCATCGGTGT CGTACAGCTCGACACGTGGGTCTACTCGCCGCTGGCCTATCGCTCGCTCGACGAGCCTTACACCGTCTACGGGCTGATCGCCGAAAAAATGGAAGTGGAC
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| Amino Acid Sequence |
>energy transducer TonB
MLMNLPGYTLKPLALAVRRHPRVLLCALAMGMSGAHAAEAVEADTASESVSAAAVVPATTQLQRVEVTGSAIRRVDAETAVPITILRADDLKKQGVTTTQ EMVQRITGSQSINNSAGSIGAGTGGASFADMRGIGPNKTLVLLNGRRLANNAISGVGSPNGSAIDLNMIPFAAIDRVEVLRDGASALYGTDAIGGVINFI TKKTLTDGSLTLGGETPTHSGGGATKDMSASWGFGDLEEDRFNVMGVVNYNKQQNLDANDRSFARDYVPGRGLNQTSGTAYPGNYFQGDNSSNPLGTNCS GPNLIARNGICRFSTREYIDLIPQTEKTSFFGKATGKLADDHNVSLEYFWARNNNHTDIGPAPLTGLSLDSSSPFYPGNGITPAPTNFTLDPTQPVDTAW RETAAGPRGSSDQNTSQRFLLNFDGLVGGWDYNVGASYNQNKVLSTLTDGYVSDAAMINGLANGVINPFGPQTAAGQALIDANEYHGQYSSAVGRVAGID GRISREIGDWFGAGPAGLALGGEYRKEKMHQQYEAFVNDVSSLGADAAGSVSGERSVKAEYAELNVPVLDSLELSAAVRHDKYSDFGSTTNPKYSFRYQP IKQLVVRGAYSEGFRAPSLYELYAPRSTTFSQGYYNDPVLCAGGTVQPGGNAGRDCAQQFLNNSGGNTELAPEKARNVTLGFVYQPVSNLSMGLDFWWIH ISNQIQSFPESAVFDDPSTYADRYVRNADGSIANIVTGNANLGIVKTSGVDVSLDYRFPNTPYGQFGLGMTGTYVTRYDFQNIIDGPYTDKVGDFQGDGV IARWKHVLVGSWSLGNTRASITNRFTTGYNDYDRTTNARVASYALWDLSVGHTFDKVLDVDAGLRNMFDRNPPFSNQAYNFQSGYDPRYADPLGRTLFAR MTYHF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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