Pseudomonas viridiflava LMCA8, RT94_RS25935
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_65, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGTCAGCGTGACCTGAGGGGCCGAGCGCAGCCTGAAGAACGCGTCCTGAACCACATCCTCCGCGCGGGACCGACAACCCACGATGCGTGCGGCAATCTTG ACCAGCAGCAGGTAATTGTCGACGAAAGCCTGAAGGAGGGGTGAATCGCACTTACTTGTGAATACTTGTTCCGTCATGGAATTCACCTTGCTGCAAAGTC ATTGGAGGGGAGCGGCCTTGTGGGTCGCACCATCACGTGGGGCGATAAATTAGTCTTAATGATAATTATTGTCAAATGCGAAAGCGCATCAGCGCACTTT AAAGGGGCGATTCCGACCAGCGCGCTCGACGCGCGTGCGAGGCGGCCGAACGCGACTAATTATTTCCGAACGCCGTCCGTTCTCATTGATGACAGGCCCG CCCATGACGCAGGCCGGGGATGACATCAGGAGAACACCATGCGTATCAATCGCGCGCATCGAGGCTTTTACACCGGATCCAATGGACGGACGGCCCTGAT
|
|
| DNA Sequence for Gene |
>RT94_RS25935
ATGAACAGCTCAACAGGCATGAAGCTGTTCTGCCTGCCGTATTCCGGTGCCAGCGCGATGTTCTACAGCCCCTGGCGGCGCACGTTGCCGGACTGGCTGA ATGTGCGCCCGCTTGAACTGCCGGGCCGCGGCATGCGCATGGCGGAGCCGTTGCAGACGGATATCGTGCAACTGGCCGATCAACTGGCCGACGAGATTGC CGCCGAACTCGACACCCCTTATGCGCTGTTCGGGCACAGCCTGGGCGGGCTGCTGGCCTTCGAACTGGCGCATGCACTGCGCGTTCGCGGGCTGCCCGCG CCTCTGGCGCTGTTCACCTCGGCCACGGCGGGGCCTGCGCGCCGCGACGTCAGCGACTACGCCGTGGCCAGGACCGATGCGCAATTGATCGAACGGCTTC GCACGCTCAAGGGCACCCGCGAAGAAGTGATCGCCAATGACGAACTCATGCAGATGATGCTGCCGATCCTGCGCGCCGATTTTCTGCTGTGTGGCAGCTT TGTCTATGGCGTGCGCGAGCCGCTGCAGATCCCCATTCACGTATTCGGCGGCAAGCAGGACAGCGTCAGCGTCGAAGAACTGCTCGACTGGCAGGAAGAC GCCGCGACGGGGTTTTCTCTGGACATGTTCGAAGGCCACCACTTCTACCTGGTCGACGAGCAGGCTCAATTGCTACGCCATCTGCGGCGTTACACCGAAC AGCACCTGACTCGCTGGCGCAACAGCGCTGCGCGGCACCTGACCCGCGCAGCTGGCTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
TGCCCGCTCGCCCGACGCGTCGCTGATCCTGCGACGCGCTTTTTTTGATACCCAGACCCGCTCTGGCAAGCCGAATCCAGCAGGAAACCCATCATGGACG CTTTCGAACTCCCCGACACTCTGGCTCAGGCGCTGCAACGTCGCGCCGCGAAAACGCCTGACCGACTGGCGCTGCGTTTTCTCACCGACGAAAACAGCCA GGGCCTGGTGTTGACCTACCGTGATCTGGACCTGCGTGCGCGCACCATTGCCGCCGCCCTGAAGCGTGAGGCAGTGCCGGGAGATCGCGCGATTCTGTTG TTTCACAGCGGTCCGGATTACGTGGCGGCGTTCTTCGGTTGTCTGTATGCCGGGGTCATTGCCGTACCGGCCTATCCGCCGGAATCCAATCGCCGTCATC ATCAGGAGCGTCTGCTGTCGATCATCGGTGACGCTGAGCCGCGTCTGCTGCTGACCGGTTCCGACCTGAAATCCGCCTTGCTGCAAATGGACGAGCTGGC
|
|
| Amino Acid Sequence |
>thioesterase
MNSSTGMKLFCLPYSGASAMFYSPWRRTLPDWLNVRPLELPGRGMRMAEPLQTDIVQLADQLADEIAAELDTPYALFGHSLGGLLAFELAHALRVRGLPA PLALFTSATAGPARRDVSDYAVARTDAQLIERLRTLKGTREEVIANDELMQMMLPILRADFLLCGSFVYGVREPLQIPIHVFGGKQDSVSVEELLDWQED AATGFSLDMFEGHHFYLVDEQAQLLRHLRRYTEQHLTRWRNSAARHLTRAAG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|