Pseudomonas viridiflava LMCA8, RT94_RS25880
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_65, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TTCAGGGCCGCCCACGTCGAAGCCGCGAAACAGAATGCCCCCGGCGCGATAAAGGTGTTCTGCGACCAGCGGCTTGAATTCGCCCAATGCTTCCATCAAG TCCAGACCTGGCTCGGGCGCCTGTACCAGCATTGGCAATGTGCCTGCCCCCGCCAGCAATGGCCGGATATCCAAACTCAACGCATGACTCATGATGACTC TCCCTTGATGGCAAAAGCGCCTGATCCCCTGCGGCCGGACGCAACGCCAATGTCCAGATTGAACGTAACCGGCGGGCGGAAAATTAGCCGACGCACGACA TTCACCCTCCCCAAATCCTGCTCTGAAACATTTCCTTTCATTTAAGCGCGAGAAAAAACTACATCTTTCGTATTCTCATTCGTCTTTAACTGAATGCAGG GCCTGTCGGTAGAACCGCGCCCGTTTTTCAGATGATGCCCCACAGAGAGCCCATGCCTGCCTGAAGGCCGCTCCATACCGTGAATCGAGACCGTTTACCC
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| DNA Sequence for Gene |
>RT94_RS25880
ATGTCGAAGAAATCCCGCTCGAAAATCTGGTTTCTCGTCCACAGCTGGCTGGCCCTGCCCATCTGGTTCTTCGTGCTGATTGTCTGTGTGACCGGCACCC TGGCTGTGGTCAGCAAGGAAATCATGTGGCTGGCGATGCCGGAAATACGTGACAACCCGCCTTCGGACACGGCCGAACGGATGAGTTTCGAGCAGATTCG CGCCACCATCGAGCGTAACGAGCCGGACCTGATCGTCGGCACGATCATGCAGCCCGACGGCGACTATTTTGCCCTCAGCGTGTTCGTGACTTACCCCGAC GGCCGTTCAGTACCGGCTTACGTCAATCCGTATACCGGGGTGATTCAGGGCCTGACGCCGTCGTTCGATTTCCGCCGCTTCACCCGCGCCCTGCATGGCT GGTGGCTGGTGCCGTTCACCAATGGCTATTCGTGGGGCTGGTATCTGGTTTCCATTCTCGGCCTGCCGCTGCTGGCGTCGCTGGTGACCGGGCTGGTGGT CTACAAGAAGTTCTGGAAAGGCTTTTTCAAGCCGCTGCGCTTCAGCCAGGGTCCGCGGATCTTCTGGGGCGACCTGCACCGGCTCAGCGGTGTCTGGTCG ATCTGGTTCATTGCCGTCATTTCCATCACAGGCACCTGGTTTCTGATTCAGGCCATTCTGGGTGACAACCAGATCAGTATCTCCAGCCGTTCCCAGGTCG CTTCGATCATTCCCCACAGCGCGGTGCCCCTGACCGCCGATGGCAGCCCTGCGCCAACCATCAGCCTGGAAAAGGCCGTGGAAATCGCCAAGGAGCGCAT TCCAGGCCTGGAAGCCAGTTTCATCACGCCGCCGTTCAACGCCTACAGCAACCTGCAGGTCGGCGGCCGCAGTTGGTATCCGCTGATGTACCAGACCGCC GAGATCAACCCGTACAGCGGTGAGATCGCCGCCTCTCATCTGCTGTCGGACCGCAACAACTTGGAATTCGTGACCGAGTCCATGCGTCCGCTGCACACCG GCGACTTCGGCGGCATCTGGATCAAGCTGATATGGGCGTTCTTCGGTCTGGTGCTGAGCATGATGGTACTCAGCGGGCTGCTGATCTGGAGCAAGCGCAC CGCACTGGCCACGCTCAATGCCTTGAAGCGCGAGAACAGAATCCAACCGACTTCCACCCGGCAAACCCCTCGGCCGCCGCTGGCGACCGGCACCCCGGAG AACAACCTGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCAAGGCCGCTGTCGCGCAACCCGCTTCGTCATTGAGCCGTTTCTGGCACAAATGGCGCTTCCACATCAATGTGCTGCTGATCCTGATTCCACTGGGTTT CATGCCCAAGTACTTTGCCGACAATGCGCTGGATCGCGGCGACACGGGCCTCGGGCAGCGTGAAATCGGCGAGTTCAAGGTCGGCCCGTGGAGCCTGCGT CTGGCCGAAGACCGCAACGAAGCGCCGCGTCTGTCCGGTGCGTCGGGCTACATGAAAAGCTTCAACGCCGCGCTGTGCAACGCCTGCATCGACCGGGTCA AGGCGACTTACCTGCGCATCGGCAAGCCCCGCAGCCTGCGCACCGCCGGGGTAATTTTCTTCGGCGGCGGCTATCGCATGGGTGCCTTCATGCAGATCCC GAAAACCACCAGCCCCGACTCGGAACTGTGGATCACCATGGAAGGCTGGGACGGTTCCGTGCATCAGACCTCCATTCCCCTGCAACAGGCCTCGCCCACC
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| Amino Acid Sequence |
>peptidase
MSKKSRSKIWFLVHSWLALPIWFFVLIVCVTGTLAVVSKEIMWLAMPEIRDNPPSDTAERMSFEQIRATIERNEPDLIVGTIMQPDGDYFALSVFVTYPD GRSVPAYVNPYTGVIQGLTPSFDFRRFTRALHGWWLVPFTNGYSWGWYLVSILGLPLLASLVTGLVVYKKFWKGFFKPLRFSQGPRIFWGDLHRLSGVWS IWFIAVISITGTWFLIQAILGDNQISISSRSQVASIIPHSAVPLTADGSPAPTISLEKAVEIAKERIPGLEASFITPPFNAYSNLQVGGRSWYPLMYQTA EINPYSGEIAASHLLSDRNNLEFVTESMRPLHTGDFGGIWIKLIWAFFGLVLSMMVLSGLLIWSKRTALATLNALKRENRIQPTSTRQTPRPPLATGTPE NNL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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