Pseudomonas viridiflava LMCA8, RT94_RS25190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0044780 bacterial-type flagellum assembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01400
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01400
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006605 protein targeting
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01311
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01400 JCVI: flagellar biosynthetic protein FliR IPR006303 Flagellar biosynthesis protein FliR 16 257 3.7E-76
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 84 103 6.3E-25
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 205 224 6.3E-25
PANTHER PTHR30065 FLAGELLAR BIOSYNTHETIC PROTEIN FLIR IPR002010 Type III secretion system inner membrane R protein 8 259 4.5E-73
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 183 205 6.3E-25
Pfam PF01311 Bacterial export proteins, family 1 IPR002010 Type III secretion system inner membrane R protein 17 247 6.6E-66
PRINTS PR00953 Type III secretion system inner membrane R protein family signature IPR002010 Type III secretion system inner membrane R protein 25 46 6.3E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.