Strain | Pseudomonas viridiflava strain LMCA8 contig_63, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
TGTGTTCATTCTCAAACTGTGCCTGATCGCAGCGGCCGGTACCAATGCCGCGCTCTTTCATGTGGGCGTCTACCGCTCGGTAACGCACTGGAACACACGG CTGGCCGCACCCTGTGTCGCCAGATTTCACGCCGTGCTTTCAATCGCACTCTGGATCGGCGTCGTGACCTGCGGACGACTGCTCGCGTACACCTGAAACT GTCGTGGTTCTCGGCCCCTTGGGCTCATCTGCTGATGCGCAACTTATTGCACAGGCGTGACTGATAAGGCCTGTTCCGAGCCATGCAGGCCAATGCGATT GGCCCGATTTGCAGTCATTTGCGCAGGTGCGCAAAATCTTGCGCGGAAAACACCGAAAAACAGATCAAAAAACAATCAAACCATCCTCAATACCTCTCTA TCCCTTTGTTTTTATGGGTTAAAAATAATCAGGCACGTATCTTGTTATAGGCATCTGTATTCGATGGGCGCGGTTGCCTGTTGGTACAGAGGAATTCGGG
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DNA Sequence for Gene |
>RT94_RS24870
ATGTCTGCCCACCAGACTTGTTTCACGCTCAACCTTGATGGCATCGATCATGGCTTTCAGGTACTCGCCTTCAAAGGCCACGAAGCGATCAGTCAGCCGT TCGCGTTTACGCTGGAGCTGGTCAGCGAGTCGTCAGGACTGGATCTGGAAAGCCTGCTGAACAGACCTGCCTTTCTGCAGTTTGCACCCGATAACAGTGG CATTCACGGGTTGATCGACCGTATCGCCCAGGGCGATTCGGGGCAACGTCTGACCCGTTACTCGGTCACCCTCCGTCCGCATCTGGCTCGCCTCGGCCAC CGCACCAACCAACGGATCTTTCAGCACCGTACGGTGCCGCAGATTATTGCCCGGATACTGGAAGAGCATGGCCTGCTGGCCACCACTTATCGCTTCCAGC TGGCCAGCGTCTATCCCGAACGCGAGTACTGCGTTCAGTACCACGAATCGGACCTGCACTTCATTCAGCGCCTCTGCGAGGAAGAAGGCCTGCATTACCA CTTCGAACACAGCCCGACTGCCCATCTGCTGGTGTTCGGCGAAGATCAGGCGGTGTTTCCCACACTGGTGCCCGTGGTGTATCGACAAGACAGCGCAATG GTCGCCGACACGCCCGTCATCCAGCGCTTCAACCTGCGGCTTGAAACCCGACCGAGCCGCACCACGCGCCGCGATTACCATTTCGAAAAACCGCGCCTGA CCATGCAAGGCGCAGTACCCGGCGACGCCCGGCCGGACCTTGAGGACTACGATTACCCCGGCCTCTTTACCCACCGCGACCGCGGTAGCCATCTGGCCGC CCGCGCTCTGGAGCGCCATCGCCACGACTACCAGCTCGCCGAAGGGCACAGTGATCAGCCACGGCTGGTCAGCGGGCATTTCCTGCCACTGAGCGAGCAT CCTCAGGCGGCGTGGAACGCACTCTGGCTGCTGACCGAGATCCGGCATGAAGGTCGTCAGCCGCAAGTGCTGGAAGCGGCAGCATCAAACGAACACTCGG GCGCAGGCGAGTTGCGCCAGGGCTATCGCAACACCTTCAGGGCCATACCCGGATCAGTCACGTTTCGGCCACACCTGCGCCATCCCAAACCGCGCATTGC CGGTAGCCAGACCGCTGTCGTGACTGGCCCGGCGGGTGAAGAGATTCATTGCGACAGACATGGCCGGGTCAAGGTCCAGTTCCACTGGGATCGCGAAGGT CAGGTCACGGATCAGAGCAGTTGCTGGCTGCGCGTGTCTTCGAGCTGGGCGGGTGACCGCTATGGCGGCATGGTCATTCCAAGGGTCGGCATGGAAGTGC TGGTGACCTTCATCGAAGGCGATCCCGACCGTCCGTTGATCAGCGGCTGCCTGTACCACGCTGAACACACGCCGCCCTACCCGCTGCCTGCCTACCAGAC CCGCAGCGTGTTCAAGACACTGAGCAGCCCCGGCGGCAAAGGCTCCAACGAACTGCGCATCGAGGACCGCGCCGGTCAGGAGCAGATCTACGTCCACGCC CAGCGCGACTGGGACCAGAACATCCAGCACGACCAGAAAATACGCGTCGGCCACGAACGGCACGACCGGGTCGAGGCCAACAGCTACAGCGAATTCAAGG CCGAGGAACATCGCGCGGTCGACGGCAGCCGCCTGACTGAAGTGCGCACGGACGATCACCTGACCGTGAGCGGCAAGCAACACATCAAGGTTGGCGAAGC ACTGCTGGCAGACGTCGGCCATGAAGTTCACATCAAGGCCGGTGATCAGGTGGTGATCGAGGCAGGAATGGAAATCACCCTGAAAGTGGGTGGCAGCCTT ATCAAGATCGACTCGGGAGGGGTAACGGTGAGCGGACCGTTGGTGAAACTGAACTCGGGAGGCGTGCCTGCGACGGGCAGCGGCGCGACGCCGAACCTGC CGGGGCTTGTCAAAATGGTTCTGACAGAAACAGCAGGCGAGTTGTTGACGCAGCGGCTGGCAGAGCCGGTTCCGCTGTCCCAGCTCTGTCAAAAGCCTGA AGGCGGAACACCCGCTGACTGTCCGCTGCCCGACTGCGGTTGTCGCAAGGCGTTGCAGGAAGGAGGCAGATCATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AGACCTGCCTGCTGCTGGAGCGTACCGACCACCTGCTGGAAAAGCTTTACCAACTGCTGCCTGATCCCAAGCCTCGAATGCTGTTCGACAAGACAGAACT TGCACCCTATCGGGACAAGAGCCCCTTATGGGTAGCCGCGACCGAAGACGACCGCCTGTTGCAGACGGTCCACAACGACCCGGAAAGCTGGCCTGGACTG ATCATCGAGAGTCCGTTTCACCACGACATTCTGCTCGCGCATCTCAGACATCTGTTGATCGTCAATTTTGAGGAAATCCGCCGAGGCGTCCTGCGTTATT CGAATCCCGTAACGGCCAGCTATTTCTTCACAACCGGCACCACCGAAGAGAACGCGCCATGGTTGGGGCCCATCTCCCGATTGTTGTGGTATGGCGGAAC CTGGCCAGACCTTTCGCAAGGCAACCAGTGCTGGATGAGCCTCGACAATCCTCACGTCTCCTGCTGGACGCCACCGGCCCAGCCAACCACACCGAGACTG
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Amino Acid Sequence |
>type IV secretion protein Rhs
MSAHQTCFTLNLDGIDHGFQVLAFKGHEAISQPFAFTLELVSESSGLDLESLLNRPAFLQFAPDNSGIHGLIDRIAQGDSGQRLTRYSVTLRPHLARLGH RTNQRIFQHRTVPQIIARILEEHGLLATTYRFQLASVYPEREYCVQYHESDLHFIQRLCEEEGLHYHFEHSPTAHLLVFGEDQAVFPTLVPVVYRQDSAM VADTPVIQRFNLRLETRPSRTTRRDYHFEKPRLTMQGAVPGDARPDLEDYDYPGLFTHRDRGSHLAARALERHRHDYQLAEGHSDQPRLVSGHFLPLSEH PQAAWNALWLLTEIRHEGRQPQVLEAAASNEHSGAGELRQGYRNTFRAIPGSVTFRPHLRHPKPRIAGSQTAVVTGPAGEEIHCDRHGRVKVQFHWDREG QVTDQSSCWLRVSSSWAGDRYGGMVIPRVGMEVLVTFIEGDPDRPLISGCLYHAEHTPPYPLPAYQTRSVFKTLSSPGGKGSNELRIEDRAGQEQIYVHA QRDWDQNIQHDQKIRVGHERHDRVEANSYSEFKAEEHRAVDGSRLTEVRTDDHLTVSGKQHIKVGEALLADVGHEVHIKAGDQVVIEAGMEITLKVGGSL IKIDSGGVTVSGPLVKLNSGGVPATGSGATPNLPGLVKMVLTETAGELLTQRLAEPVPLSQLCQKPEGGTPADCPLPDCGCRKALQEGGRS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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