Pseudomonas viridiflava LMCA8, RT94_RS24870

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_63, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGTGTTCATTCTCAAACTGTGCCTGATCGCAGCGGCCGGTACCAATGCCGCGCTCTTTCATGTGGGCGTCTACCGCTCGGTAACGCACTGGAACACACGG CTGGCCGCACCCTGTGTCGCCAGATTTCACGCCGTGCTTTCAATCGCACTCTGGATCGGCGTCGTGACCTGCGGACGACTGCTCGCGTACACCTGAAACT GTCGTGGTTCTCGGCCCCTTGGGCTCATCTGCTGATGCGCAACTTATTGCACAGGCGTGACTGATAAGGCCTGTTCCGAGCCATGCAGGCCAATGCGATT GGCCCGATTTGCAGTCATTTGCGCAGGTGCGCAAAATCTTGCGCGGAAAACACCGAAAAACAGATCAAAAAACAATCAAACCATCCTCAATACCTCTCTA TCCCTTTGTTTTTATGGGTTAAAAATAATCAGGCACGTATCTTGTTATAGGCATCTGTATTCGATGGGCGCGGTTGCCTGTTGGTACAGAGGAATTCGGG
DNA Sequence for Gene
>RT94_RS24870
ATGTCTGCCCACCAGACTTGTTTCACGCTCAACCTTGATGGCATCGATCATGGCTTTCAGGTACTCGCCTTCAAAGGCCACGAAGCGATCAGTCAGCCGT TCGCGTTTACGCTGGAGCTGGTCAGCGAGTCGTCAGGACTGGATCTGGAAAGCCTGCTGAACAGACCTGCCTTTCTGCAGTTTGCACCCGATAACAGTGG CATTCACGGGTTGATCGACCGTATCGCCCAGGGCGATTCGGGGCAACGTCTGACCCGTTACTCGGTCACCCTCCGTCCGCATCTGGCTCGCCTCGGCCAC CGCACCAACCAACGGATCTTTCAGCACCGTACGGTGCCGCAGATTATTGCCCGGATACTGGAAGAGCATGGCCTGCTGGCCACCACTTATCGCTTCCAGC TGGCCAGCGTCTATCCCGAACGCGAGTACTGCGTTCAGTACCACGAATCGGACCTGCACTTCATTCAGCGCCTCTGCGAGGAAGAAGGCCTGCATTACCA CTTCGAACACAGCCCGACTGCCCATCTGCTGGTGTTCGGCGAAGATCAGGCGGTGTTTCCCACACTGGTGCCCGTGGTGTATCGACAAGACAGCGCAATG GTCGCCGACACGCCCGTCATCCAGCGCTTCAACCTGCGGCTTGAAACCCGACCGAGCCGCACCACGCGCCGCGATTACCATTTCGAAAAACCGCGCCTGA CCATGCAAGGCGCAGTACCCGGCGACGCCCGGCCGGACCTTGAGGACTACGATTACCCCGGCCTCTTTACCCACCGCGACCGCGGTAGCCATCTGGCCGC CCGCGCTCTGGAGCGCCATCGCCACGACTACCAGCTCGCCGAAGGGCACAGTGATCAGCCACGGCTGGTCAGCGGGCATTTCCTGCCACTGAGCGAGCAT CCTCAGGCGGCGTGGAACGCACTCTGGCTGCTGACCGAGATCCGGCATGAAGGTCGTCAGCCGCAAGTGCTGGAAGCGGCAGCATCAAACGAACACTCGG GCGCAGGCGAGTTGCGCCAGGGCTATCGCAACACCTTCAGGGCCATACCCGGATCAGTCACGTTTCGGCCACACCTGCGCCATCCCAAACCGCGCATTGC CGGTAGCCAGACCGCTGTCGTGACTGGCCCGGCGGGTGAAGAGATTCATTGCGACAGACATGGCCGGGTCAAGGTCCAGTTCCACTGGGATCGCGAAGGT CAGGTCACGGATCAGAGCAGTTGCTGGCTGCGCGTGTCTTCGAGCTGGGCGGGTGACCGCTATGGCGGCATGGTCATTCCAAGGGTCGGCATGGAAGTGC TGGTGACCTTCATCGAAGGCGATCCCGACCGTCCGTTGATCAGCGGCTGCCTGTACCACGCTGAACACACGCCGCCCTACCCGCTGCCTGCCTACCAGAC CCGCAGCGTGTTCAAGACACTGAGCAGCCCCGGCGGCAAAGGCTCCAACGAACTGCGCATCGAGGACCGCGCCGGTCAGGAGCAGATCTACGTCCACGCC CAGCGCGACTGGGACCAGAACATCCAGCACGACCAGAAAATACGCGTCGGCCACGAACGGCACGACCGGGTCGAGGCCAACAGCTACAGCGAATTCAAGG CCGAGGAACATCGCGCGGTCGACGGCAGCCGCCTGACTGAAGTGCGCACGGACGATCACCTGACCGTGAGCGGCAAGCAACACATCAAGGTTGGCGAAGC ACTGCTGGCAGACGTCGGCCATGAAGTTCACATCAAGGCCGGTGATCAGGTGGTGATCGAGGCAGGAATGGAAATCACCCTGAAAGTGGGTGGCAGCCTT ATCAAGATCGACTCGGGAGGGGTAACGGTGAGCGGACCGTTGGTGAAACTGAACTCGGGAGGCGTGCCTGCGACGGGCAGCGGCGCGACGCCGAACCTGC CGGGGCTTGTCAAAATGGTTCTGACAGAAACAGCAGGCGAGTTGTTGACGCAGCGGCTGGCAGAGCCGGTTCCGCTGTCCCAGCTCTGTCAAAAGCCTGA AGGCGGAACACCCGCTGACTGTCCGCTGCCCGACTGCGGTTGTCGCAAGGCGTTGCAGGAAGGAGGCAGATCATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
AGACCTGCCTGCTGCTGGAGCGTACCGACCACCTGCTGGAAAAGCTTTACCAACTGCTGCCTGATCCCAAGCCTCGAATGCTGTTCGACAAGACAGAACT TGCACCCTATCGGGACAAGAGCCCCTTATGGGTAGCCGCGACCGAAGACGACCGCCTGTTGCAGACGGTCCACAACGACCCGGAAAGCTGGCCTGGACTG ATCATCGAGAGTCCGTTTCACCACGACATTCTGCTCGCGCATCTCAGACATCTGTTGATCGTCAATTTTGAGGAAATCCGCCGAGGCGTCCTGCGTTATT CGAATCCCGTAACGGCCAGCTATTTCTTCACAACCGGCACCACCGAAGAGAACGCGCCATGGTTGGGGCCCATCTCCCGATTGTTGTGGTATGGCGGAAC CTGGCCAGACCTTTCGCAAGGCAACCAGTGCTGGATGAGCCTCGACAATCCTCACGTCTCCTGCTGGACGCCACCGGCCCAGCCAACCACACCGAGACTG
Amino Acid Sequence
>type IV secretion protein Rhs
MSAHQTCFTLNLDGIDHGFQVLAFKGHEAISQPFAFTLELVSESSGLDLESLLNRPAFLQFAPDNSGIHGLIDRIAQGDSGQRLTRYSVTLRPHLARLGH RTNQRIFQHRTVPQIIARILEEHGLLATTYRFQLASVYPEREYCVQYHESDLHFIQRLCEEEGLHYHFEHSPTAHLLVFGEDQAVFPTLVPVVYRQDSAM VADTPVIQRFNLRLETRPSRTTRRDYHFEKPRLTMQGAVPGDARPDLEDYDYPGLFTHRDRGSHLAARALERHRHDYQLAEGHSDQPRLVSGHFLPLSEH PQAAWNALWLLTEIRHEGRQPQVLEAAASNEHSGAGELRQGYRNTFRAIPGSVTFRPHLRHPKPRIAGSQTAVVTGPAGEEIHCDRHGRVKVQFHWDREG QVTDQSSCWLRVSSSWAGDRYGGMVIPRVGMEVLVTFIEGDPDRPLISGCLYHAEHTPPYPLPAYQTRSVFKTLSSPGGKGSNELRIEDRAGQEQIYVHA QRDWDQNIQHDQKIRVGHERHDRVEANSYSEFKAEEHRAVDGSRLTEVRTDDHLTVSGKQHIKVGEALLADVGHEVHIKAGDQVVIEAGMEITLKVGGSL IKIDSGGVTVSGPLVKLNSGGVPATGSGATPNLPGLVKMVLTETAGELLTQRLAEPVPLSQLCQKPEGGTPADCPLPDCGCRKALQEGGRS
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site