Pseudomonas viridiflava LMCA8, RT94_RS01850

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_6, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CCGCAGGCGTACACAGCGCCGAGCACAGCGCAGGGCGCCAACACGCCGACCCAGGCCTGCAGCGCCGTACGACAGGCGAAGCACCAGAGCACGGCGACCA GATAGACAAGGAATGACAGCATCATTGCCGTCACCACCGCTTCGGCACGGGGAAGCGGCAGCCACTGCGCAATGCAGATGCTGGTCATCGAAGCCAGCAG ATAACCGGCGAAGATGGCTGCGAGCGCCCGCGAGGCCACGGCCAGTCGATAGGCAACTGTCACGCCTCGGGTTTTGGGTATTCGCTTTTTGACCACGGGG GTGATTGCGGCAGGTGAGCCATCCATTGGAGCGTCTTCGTTCGGTACGTTAAACGGCGATAGGCGGGTCATGACGCCAGCCAGATCCTGATTCGCCTTCA AACCGACGAATGAAGCGCAATATTAATGATAAATATTCTCATACGCAAAAGAGTCTGACAGAATCCACGCCACCCATGAATCCTCTGGATTGCTTTCGTG
DNA Sequence for Gene
>RT94_RS01850
ATGCACAGCACCCACCCTGCCCTCACCCACACCGTCGACGGCCTGTTCCGGGCGCATAACGCCTGGCTGACGGGCTGGTTGCGGCGCAGGCTCGGCTGTC CGCACAGTGCCGCGGATCTGGCGCAGGACACGTTCATCAAGGTGCTGGGCGCGCGCGACACGCAGCAGATCGTCGAGCCGCGCGCGTTCCTGACCACCAT CGCCCGACGCGTGCTGTGCAATCACTACCGACGTCAGGATCTGGAACGCGCTTATTATCAGGCGCTGTCCGAACTGCCCGAGAGCGTGGCGCCATCCGAA GAAGAACGGGCGATCATTCTTGAAACGCTGGTGGAACTGGATCAATTGCTGGATGGCCTTCCAGGCCCGGTGAAAAGCGCGTTCCTGATGTCGCAGGTTG ATGGCCTGAGCCATGGCGAAATCGCCAGCGCGTTGGGTATTTCCATCGCAACGGTCAAACGCCACCTGAACAAGGCCGCCCTGCGCTGCTACTTCGCCCT ATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ACCTGAACAGCGAATCCCTGAACAAGTCCGACATCTCGCCTGCGGTTGCGCAACAGGCCGTCAGTTGGCTGCTGGAAATGCAGGAAGGTTCGTTGACTGC CGGTCGTCAGAAGGCCTGGCAGCTCTGGCTCAACGGCAACGCCGAGCACCAACGGGCCTGGGCGCATATCCAGCGGGTCAATCAACGCTTGAGTGGCCTT TCATCACCGCTCGCCCACGCGGCTCTTGGCGCGCCGAAATCCGGCAGCCGACGTCACGCGCTCAAATTGCTGTTGTTGCTGGGCGCAGGTTCAGTCGCGG GCTGGAGCCTGCGTGACCAGATCGAGCTGCAACCCTTGCTGGCCGATTACAACAGCGGCGTGGGCGAGCAGCGCAAGGTGGCCTTGAGCGACGGCAGCCA GATCCAGTTGAACACCGCCAGCGCCGTGGATGTGAAATACGATGCGCAGCAGCGACTGATTCGGCTGTTGTCGGGCGAAATCCTGATGACCGCCTCGGCC
Amino Acid Sequence
>RNA polymerase sigma factor
MHSTHPALTHTVDGLFRAHNAWLTGWLRRRLGCPHSAADLAQDTFIKVLGARDTQQIVEPRAFLTTIARRVLCNHYRRQDLERAYYQALSELPESVAPSE EERAIILETLVELDQLLDGLPGPVKSAFLMSQVDGLSHGEIASALGISIATVKRHLNKAALRCYFAL
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site