Pseudomonas viridiflava LMCA8, RT94_RS23390

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_51, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CGGGGCGCGAATTGCGCCATGGAAGGCCCCGTCGCGCACCAGAAACAGTGCCGGCAGGTGAAACACTTCGTAGCGCTGCACCGCGCCACCATTGTCCTGG GCGTCGATCCAGCACAGGCGATCAACCGCAAGGCCCATCCCAGGCAATTGCTGCCTGGCCCAGCGACAGGCAGAGCAGCCCACGCTGGTAAAAATGACCA GCGAGGTGCCGGTCAGCTCAAGCAATTGGTGATCAATGTCAAAGTCGCTCAGTTGCAGTTCAGTCAACGAAATAGCCCTCACCTCTGGCCGTACACTATC CGTTGCAGCGCCAGTGGTTGCAAATGACAGATGCTTCAAGGCCGTCAGGTCGCGGCAAACAGGCCCGATACGCCGCTTTGCCCATTGTCGAACAGCGCGA TAACGCGCTAAGGTTCCGCTCCCCACTGCGCTCAACCTGCTGGGCACCGCCGCACAGGGGATCGCAGGCGGCCAGTACCCGCGACCTGATGAGTAACACG
DNA Sequence for Gene
>RT94_RS23390
ATGGCTGATTTACCGATTGACGACCTCAACGTTGCATCCAACGAGACTCTGATCACACCGGATCAGCTCAAGCGCGAAATCCCCCTGACCGACGCTGCCC TGCACACGGTCAGCCAGGGTCGCGAAGTGATCCGCAATATTCTCGACGGCAATGACCACCGCCTGTTCATCGTGATCGGCCCATGCTCGATCCATGACCT GAAAGCGGCCAAGGAATACGCCGAGCGCCTCAAGGCGCTGGCAGCAGAGGTGTCCGACACCCTGTATCTGGTCATGCGCGTCTATTTCGAGAAACCGCGC ACTACCGTGGGTTGGAAAGGCCTGATCAACGACCCGTACCTGGATGACTCTTTCAAGATCCAGGACGGCCTGCATATCGGCCGTCAGTTGCTGCTGGATC TGGCCGAAATGGGCCTGCCGACCGCAACCGAAGCGCTGGACCCGATCTCCCCGCAGTATCTGCAGGACCTAATCAGTTGGTCGGCCATCGGCGCCCGGAC CACCGAATCCCAGACACACCGCGAAATGGCTTCCGGCCTGTCGTCGGCCGTCGGCTTCAAGAACGGCACCGACGGCGGCCTCACCGTTGCCATCAACGCC CTGCAGTCGGTTTCCAGCCCGCACCGGTTCCTGGGTATCAATCAGGAAGGCGGCGTGTCCATCGTGACCACCAAAGGCAATGCCTACGGTCATGTGGTGC TGCGCGGCGGCAACGGCAAGCCGAACTACGATTCGGTGAGCGTGGCGCTCTGTGAGCAGGCTCTGAACAAGGCCGGCATTCGCCCGAACATCATGGTCGA CTGCAGCCACGCCAACTCCAACAAGGACCCGGCCCTTCAGCCACTGGTCATGGAAAACGTCGCCAACCAGATTCTGGAAGGCAACGAGTCGATCATCGGT CTGATGGTCGAGAGCCATCTGAACTGGGGTTGTCAGGCCATTCCCAAGGACCTGTCGGAACTGCAATACGGCGTGTCCATCACCGATGCCTGCATCGATT GGGAAAGCACCGAGAAAACCCTGCGCGGCATGCATGCCAAGCTCAAGGGTGTATTACCGGCGCGCAAGCGCAAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGGTCACGCACACCAAAACGCCGAGCAATGCTCGGCGTTTTTGCAGGTGTCGATTACAGCGTGATGCAGATCAGATCTTCGCGGCCTGTCGCTGATGGC GCTCCATATAACGCTCAACGTAGGAGCAGGAAGGAATAACGGTGTAGCCCATGCTGTCGGCGTAGTCGAGTGCCTTCTCGGTCAGGGCAGCAGCGATGCC CCTGCCGCGCAACGCATCCGGGACGAAAGTCCGATAGAAATCCAGGGTCTGTTTCCCCAGATCCATATAGGTCAGGTAGGCCCGATGGCCATCGATATTG ATTTCGAACTGATGGCCGGTCTGATCATGGTGGATGGACAACGCCTCGCTCATCGCTACTCCTCGCGGGTCTTGGAATTTGACCCCTACCTTACCGATCT TTTTCCGGCGAAGGAACATCTACGCCACCCTGTGCCTGTTTTTGACACCGGGAAGAGCCTGGCCGATCTCAACAAAGAGCACCTGTAAATAGTAGGCGTC
Amino Acid Sequence
>phospho-2-dehydro-3-deoxyheptonate aldolase
MADLPIDDLNVASNETLITPDQLKREIPLTDAALHTVSQGREVIRNILDGNDHRLFIVIGPCSIHDLKAAKEYAERLKALAAEVSDTLYLVMRVYFEKPR TTVGWKGLINDPYLDDSFKIQDGLHIGRQLLLDLAEMGLPTATEALDPISPQYLQDLISWSAIGARTTESQTHREMASGLSSAVGFKNGTDGGLTVAINA LQSVSSPHRFLGINQEGGVSIVTTKGNAYGHVVLRGGNGKPNYDSVSVALCEQALNKAGIRPNIMVDCSHANSNKDPALQPLVMENVANQILEGNESIIG LMVESHLNWGCQAIPKDLSELQYGVSITDACIDWESTEKTLRGMHAKLKGVLPARKRK
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site