Pseudomonas viridiflava LMCA8, RT94_RS23320
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_51, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGCTGGAAATCCTGCGCGATTACCGCGACCGTTTACCTGCGGCGGTGGTGCATTGCTTCACTGGCGAGCGGGCTGCGCTGTTCAGCTATCTGGACCTGGA CCTGCACATCGGTATCACTGGCTGGATCTGCGACGAGCGCCGTGGCACCCATCTGCACCCGCTGGTGGGTAACATTCCCCGCGGCCGACTGATGCTGGAA AGCGACGCGCCTTATCTGCTGCCGCGCAGCCTGAGGCCCAAACCGAAAAACGGTCGCAACGAACCCGCCTATCTGCCCGAAGTGCTGCGCGAAGTGGCGC TGCACCGAGGCGAGTCCCAGGAGGATCTGGCGCGTCACAGCACAGCGTGTGCCCGTGAGTTCTTTGGCTTGCCAGTCGTGGAACAGGCCGCCGACGAAAA TCCGCAGTTTTCTTGATCCGCGTCAAAGGTCGCTTTGATGACCGGAATACAGTGATGGCACCTTGCTGCTATTTCTACCGATCATCGAAGAAGACCCCTC
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| DNA Sequence for Gene |
>RT94_RS23320
ATGCGCTCATGGCTTGGCAACCTGTCACTCAAGTACAAATTCTGGGCGGTAAACGCGGTCGCGTTCATCACCACCCTGCTGCTGGTGCTGTACGCCGTTC ATCTGGAGCAGCAGTCGCGTGAGGAATCGGCGCACAACGCTGCGCAACTGATCGCCCAATGGCCCGCTACCCAGCCACTGCCTGCCAGCGGCGCAGCGCT CATCCATGCACCGACCTTTACCGATGTACTTGAACAGCATTTTGCTCACTACGCCCTGGCCGTGTTTGTCCTGATGATTGTGATGCTCGGCGCTTCGCAG TTACTGATCCGTTTTCTGCTCAGTCAGCTCAACACGCTGAAAGACGTCATGCTGCATGTCGAACAGAGCGGTGACCTTTCGGCGCGCGTACCCAACCGCA GTGACGACGAAGTCGGGCAGATGGCCAAGGCGTTCAATGCGTTGCAGGCCGGGTATCAGCGTGTGGTTGCCACAGTGTCGCAGACCGCCATCCGGCTCGA TCAGGGAGCCGCGCACCTGGCGTCCGGCATGACTGAGGTGCGTCACGGCATGCTGGGCCAGCAGAGCGAAACCGATCAGGTCGCCACGGCCATCAACGAG ATGACCGCCACCGTGCACCACATCGCTCAGCACGCCACCACCACGCGTGATCAGTCACAGACCGCCGATGCGTTGGCAGGCAGCGGCAAAGCGGTGGTGG ACCGGGTGCAGGTATCGATTGCCGGGCTGTCCAGCGGCGTGCAGCAGACCGCCGAAATGATCCAGCGCATGGCCGCCGACAGCCAGAAGATCAATGGCGT GGTCAATGTGATCCATAGCATTGCCGAGCAGACCAACCTGCTGGCGCTCAACGCCGCGATTGAAGCGGCGCGGGCCGGTGAGATGGGACGCGGCTTTGCC GTGGTCGCTGACGAAGTTCGCAACCTTGCCAAGCGTGTACAGACGTCCACCGACGAAATCACCACCATGGTTTCAGCCCTGCAAAGCGGTACACGCGACG CGGTGGATTTCATGCAGGACAGCTCGTACAAGGCCGATGAATGCGTGCAGCAGGCCCGTGAAGCGGGTGAAGCGTTGGCGGCGATTGCTGGCGCCGTGGC GCAGATGCGTGAAAGCAATACGCAGATCGCAGTGGCCGCTCAGCAACAGAGTCAGGTTGCGGAAGAGATGAATCGGGCAGTGGTGAGCATTCGCGATGTG ACAGAACGCACCGTGACCCAGACCGTGGAGTCGGCCAATACCAGCGGCGAACTCGCGATACTGGCGGGCGAACTGAACACCGCCATCGGCCAACTCAAGC TGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGGCTGTTTGTAAACGCTATCACACCGATAGTCAGGCTTGACTCGCGGCCTGTCGGGGTCGGGCCTATTCTTCATGCATTGAAACATGCGTTGAATGCA TTGAAGAGGACAGCAGTATGGGCAAGCGACTTCCCAATTTACACACATGGCAGTGGCGCGGTTACGCAGACAATCATCGGCATCCGGCGAATCTGGTGCT GCACCTGATCGCCGTTCCCCTGTTCATCCTGGCAGCGCTGTTGATCGTTGACGGGCTGTTTTCACTCAGCGTCTCGTCGATTGCTATCGGCGTCATCGGA CTGGTAGCGGCGCTGGCTTTTCAGCGTCACGGCCACACGCTGGAACAGCAGTCACCTGAACCGTTCAGTGATCACAGCGACGCGGTCAAACGCCTGCTGG TCGAGCAATTCGTGACCTTCCCGCGCTTCGTGCTCAGTGGTGCATGGTGGCGGGCCTGGAAGGAGCGGCATCGGCGGTAGCATTAACAGCCCGGTCTTAC
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| Amino Acid Sequence |
>chemotaxis protein
MRSWLGNLSLKYKFWAVNAVAFITTLLLVLYAVHLEQQSREESAHNAAQLIAQWPATQPLPASGAALIHAPTFTDVLEQHFAHYALAVFVLMIVMLGASQ LLIRFLLSQLNTLKDVMLHVEQSGDLSARVPNRSDDEVGQMAKAFNALQAGYQRVVATVSQTAIRLDQGAAHLASGMTEVRHGMLGQQSETDQVATAINE MTATVHHIAQHATTTRDQSQTADALAGSGKAVVDRVQVSIAGLSSGVQQTAEMIQRMAADSQKINGVVNVIHSIAEQTNLLALNAAIEAARAGEMGRGFA VVADEVRNLAKRVQTSTDEITTMVSALQSGTRDAVDFMQDSSYKADECVQQAREAGEALAAIAGAVAQMRESNTQIAVAAQQQSQVAEEMNRAVVSIRDV TERTVTQTVESANTSGELAILAGELNTAIGQLKL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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