Pseudomonas viridiflava LMCA8, RT94_RS22630
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_50, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGGTTTCGAGGGCATTGCCTGGGATCCGCGTCGCCAACAGCTGATACTGGGCGAAGAACGGCCTGCTGCGCTGTACACCTGGAAAAGCGATGGCAGTGAC GTGCTCAAGGGCGATAAGCAGAAACTGCCAAGCCGTTCGCTGGACATGCGCAACCTGTCGTCGTTGAGTATCGACCCGCGCACCGGTCACATGCTGGCGC TGTCGGCGGATTCGCATCTGCTGCTGGAAGTGGACGAGCAGGGCGAACAGGTCAGCTTCATGACCTTGCTGGGTGGCATGAATGGCCTGAAAGAAACGAT TCCGCGTGCTGAAGGCGTTGCGCTGGATGAGGCAGGAACGTTGTACATGGTGAGCGAACCGAACCTGTTCTATTCGTTTCGCAAGCACTGAGCCAGGACG GCGACACATACTTGGTAAAAAAGTAGCACTACGCCATTAAGCTTGTTTTCAGAATGGCGTGCTATCAATGCCGCCCGCTAAACCTTTTCGAGTCACCCCA
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| DNA Sequence for Gene |
>RT94_RS22630
ATGCGTCGCTCTACCCGCTCTTTGCTCCTGCTTGTCATCCTCGTGCCGTTGATCGCCGTGCTGTTTTCCATCGCCAACCAGCGGTACCGTTTCGTGGAGC GTGCTCAGTTCGACTGGCAGATGTTCTGGCAGTCCGATTCGCAGGAAGCCATTGGCCTTGATCAATACCGCGCCGTGATCGAAGGGCAGGTTATCGACGG GCTGACAGACGACGTTTCGGGCCTGAGCTACGATCCTGATCGTAAAAGTCTGTTCACGGTGACCAACCAGAACGCCGAAATGGTCGAGTTGAGTCTCGAT GGGCGCATCCTGCGACGAATCAAGTTGATCGGTTTTGGGGATGCAGAAGCGGTCGAGTACATCAGTCCTGGCGTGTACGTGATCAGCGACGAGCGCCAGC AGCGTTTGATCAAGGTGCACATCGATGACAGCACCCGGTCGGTGGATGCGGCCAATGCCGAACAACTGACGCTGGGGCTCAACGCGGGCGGCAACAAGGG CTATGAAGGTCTGGCCTATGACCGGCACCGTGAGCGCCTGTTCGTCGCCCGCGAACGTGACCCGGTGCAGATCATCGAGGTGCGCGGCTTCCCCAAGACG AATGCCGACGGCCCAAGCAACCTTCAGGTGATTTCCGACAGCAAACGCGATGCCGGTCTGTTCGTGCGCGATCTTTCCAGCCTGCAGTTCGATCAGAACA GCGGTCACTTGCTGGCGCTGTCCGATGAGTCCAGGCAGATCGTCGAGCTGGACATTGATGGCCGTCCGATTGGCAGCGGCTCGTTGAAGAAAGGGCAGAT GGGCCTGAGCAAGACCGTGCCCCAGGCCGAAGGCGTGGCCATGGACGACGATGAAGTGCTGTATCTGGTGAGCGAGCCGAACCTGTTCTATGTGTTTCGC AAGCCATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTGCGAAACGTTAGCCAGTTGAAACAGAAGTGCCCACGCAAGGTGGGCACTTCTTCAAGCCGTGACGCTTAGCGGGTCAGGGTTTTTACGCCTTCGGC GGTACCCAGCAACAGCAGATCCGCCGGACGCGCCGCGAATAGGCCATTGGTGACCACGCCGACGATGGCGTTGATCTGTGCTTCCAGCTCCACCGGATTG GTGATGCTCATGTTGTGCACGTCGAGAATGATGTTGCCGTTATCGGTCAGCACGCCTTCACGGTAGACCGGGTCGCCGCCCAACTTGACCAGTTGGCGCG CCACATGGCTGCGGGCCATCGGGATGACTTCAACCGGCAGCGGAAATGCACCCAGCACCGGCACCAGCTTGCTGCCGTCGGCGATGCAGATGAAGGTCTT GGCGACAGCCGCCACGATCTTCTCGCGGGTCAGGGCTGCGCCGCCGCCCTTGATCAGGTTCAGGTGCTCGTCGCTCTCGTCCGCGCCGTCGATATAGAAC
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| Amino Acid Sequence |
>DNA-binding protein
MRRSTRSLLLLVILVPLIAVLFSIANQRYRFVERAQFDWQMFWQSDSQEAIGLDQYRAVIEGQVIDGLTDDVSGLSYDPDRKSLFTVTNQNAEMVELSLD GRILRRIKLIGFGDAEAVEYISPGVYVISDERQQRLIKVHIDDSTRSVDAANAEQLTLGLNAGGNKGYEGLAYDRHRERLFVARERDPVQIIEVRGFPKT NADGPSNLQVISDSKRDAGLFVRDLSSLQFDQNSGHLLALSDESRQIVELDIDGRPIGSGSLKKGQMGLSKTVPQAEGVAMDDDEVLYLVSEPNLFYVFR KP
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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