Pseudomonas viridiflava LMCA8, RT94_RS01675
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCAATTTCCAACCAGCTTTTCTTCAATAACGTTCTTTATGGCCAATTTGCCGGTCTTGGAAGGGACGAATCGTCACGCACGCTGCACAGTTATAGAAAT AAAAGAGAGAGAGTATTTAAAGCTTTTCTATAAAGCTTATAATTCTTACGTCGGGCATATCTGTGGATAAAACGCTGAAAGCCTTGCTATGCAAGGTTTA CAGCGTTTCAAAAGGTTGTCGAGAAACCGTGCTCTGCCTGTGCTGCACCCTCGGAAAAGCTGTGCATGAAAGGCTGATTTATCCACAGGCGTGTTATCCA CAGACTTCAACCCCGACTTATGCAATGGGCTGAAGTAGGCTTATCCACAGAGCTTATGCACATACCGTTCGTCGTCTGTAGATGCCTCAAATCAATGATT TATAGCCGACTGTTAGCAACCTACATGTGGATAAGTCTTCAACGGACCGTTACAATGGCGGCTGTTTTTGCCACACCGGCTTTTGACTTAGGGGATATCC
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| DNA Sequence for Gene |
>RT94_RS01675
GTGTCAGTGGAACTTTGGCAGCAGTGCGTGGAGCTTTTGCGCGATGAGCTGCCTGCCCAGCAATTCAACACTTGGATCCGTCCGCTACAGGTCGAAGCCG AAGGCGACGAGTTGCGTGTCTATGCACCGAACCGCTTCGTGCTTGATTGGGTGAATGAAAAATACCTGGGCCGATTGCTCGAGCTCCTTGGCGAACACGG TCAAGGGATGGCGCCTGCGCTTTCCTTATTAATAGGAAGCAAACGCAGCTCTGCGCCGCGTGCCGCACCTAACGCGCCGCTCGCCGCAGCTGCTTCGCAA GCCTTGTCTGCGAATTCGGCCAGCAGCGTTCAGGCTCCTGCTCCGGTTGCCGCGCCCGTTGCCCAGGCAGCGTCGCCCTCTCCTGCTCAGGAACTGCCGG CTCACAACGAGCCCTCGCGCGACAGTTTCGATCCCATGGCCGGTGCGAGTTCTCAACAGGCACCAGCGCGCGCTGAACAACGTACCGTGCAGGTCGAAGG TGCGCTCAAGCACACCAGCTACCTGAACCGTACGTTCACGTTCGAGAATTTTGTAGAGGGTAAATCCAACCAGCTGGCGCGCGCTGCAGCCTGGCAGGTC GCAGATAACCCGAAGCACGGCTATAACCCGCTGTTCCTTTATGGCGGTGTCGGTCTGGGTAAGACGCACTTGATGCATGCTGTGGGTAACCATCTGCTCA AGAAAAACCCGAACGCCAAGGTCGTCTACCTGCATTCGGAGCGTTTCGTGGCCGACATGGTCAAGGCGCTGCAGCTCAACGCGATCAACGAGTTCAAGCG TTTCTATCGCTCGGTCGATGCGCTGCTGATCGATGACATCCAATTCTTCGCCCGCAAGGAACGTTCGCAGGAAGAGTTTTTCCACACGTTCAACGCGCTC CTTGAAGGCGGACAGCAGGTCATCCTGACCAGCGACCGTTATCCGAAAGAGATTGAAGGTCTCGAAGAGCGTCTCAAATCGCGTTTCGGCTGGGGTCTGA CCGTAGCGGTCGAACCACCCGAGTTGGAGACCCGCGTGGCGATCCTCATGAAGAAGGCAGATCAGGCCAAGGTCGATCTCCCCCATGACGCTGCATTTTT CATCGCGCAACGCATTCGCTCCAACGTCCGTGAACTCGAAGGCGCGCTCAAGCGAGTCATCGCGCACTCGCACTTCATGGGACGTGACATCACGATCGAA CTGATTCGTGAGTCGCTGAAAGACCTGTTGGCTCTGCAAGACAAGCTGGTGAGTGTGGATAACATTCAGCGCACCGTTGCCGAGTACTACAAGATCAAGA TCTCCGACCTGTTGTCCAAGCGTCGTTCCCGCTCTGTAGCCCGTCCAAGACAGGTTGCGATGGCGTTGTCCAAAGAGCTGACCAACCACAGTCTGCCGGA AATCGGTGATGTGTTTGGCGGCCGCGACCATACAACCGTTCTGCACGCGTGCCGAAAGATCAACGAGCTCAAGGAATCCGACGCGGATATCCGCGAGGAC TACAAGAACCTGCTGCGCACTCTGACTACGTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGACGCCAGTGCAGCTTATTAAGGCAAGGGACTAGACCATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAATTGGTGGCCGGCGTGGT TGAACGCCGTCAGACCTTGCCGGTGCTCTCCAACGTATTGATGGTCGTCGAAGGCCAGCAACTGTCGCTGACCGGTACCGACCTTGAAGTCGAACTGGTT GGACGCGTGCAACTGGAAGAGCCGGCCGAGTCTGGGGAAATTACTGTCCCTGCGCGTAAGCTGATGGACATCTGCAAAAGCCTGCCCAATGACGCGTTGA TCGATATCAAGGTCGACGACGCCAAGCTGGTGGTCAAGGCCGGCCGTAGCCGTTTCACCTTGTCCACGCTGCCTGCCAACGACTTCCCTACCGTGGAAGA AGGTCCGGGTTCGCTGACGTTCCAGTTGGGTCAGAGCAAGCTGCGCCGTTTGATTGAGCGCACCAGCTTCGCCATGGCTCAGCAGGACGTGCGTTACTAC
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| Amino Acid Sequence |
>chromosomal replication initiator protein DnaA
MSVELWQQCVELLRDELPAQQFNTWIRPLQVEAEGDELRVYAPNRFVLDWVNEKYLGRLLELLGEHGQGMAPALSLLIGSKRSSAPRAAPNAPLAAAASQ ALSANSASSVQAPAPVAAPVAQAASPSPAQELPAHNEPSRDSFDPMAGASSQQAPARAEQRTVQVEGALKHTSYLNRTFTFENFVEGKSNQLARAAAWQV ADNPKHGYNPLFLYGGVGLGKTHLMHAVGNHLLKKNPNAKVVYLHSERFVADMVKALQLNAINEFKRFYRSVDALLIDDIQFFARKERSQEEFFHTFNAL LEGGQQVILTSDRYPKEIEGLEERLKSRFGWGLTVAVEPPELETRVAILMKKADQAKVDLPHDAAFFIAQRIRSNVRELEGALKRVIAHSHFMGRDITIE LIRESLKDLLALQDKLVSVDNIQRTVAEYYKIKISDLLSKRRSRSVARPRQVAMALSKELTNHSLPEIGDVFGGRDHTTVLHACRKINELKESDADIRED YKNLLRTLTT
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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