Pseudomonas viridiflava LMCA8, RT94_RS01670
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCGATCTCCCCCATGACGCTGCATTTTTCATCGCGCAACGCATTCGCTCCAACGTCCGTGAACTCGAAGGCGCGCTCAAGCGAGTCATCGCGCACTCGC ACTTCATGGGACGTGACATCACGATCGAACTGATTCGTGAGTCGCTGAAAGACCTGTTGGCTCTGCAAGACAAGCTGGTGAGTGTGGATAACATTCAGCG CACCGTTGCCGAGTACTACAAGATCAAGATCTCCGACCTGTTGTCCAAGCGTCGTTCCCGCTCTGTAGCCCGTCCAAGACAGGTTGCGATGGCGTTGTCC AAAGAGCTGACCAACCACAGTCTGCCGGAAATCGGTGATGTGTTTGGCGGCCGCGACCATACAACCGTTCTGCACGCGTGCCGAAAGATCAACGAGCTCA AGGAATCCGACGCGGATATCCGCGAGGACTACAAGAACCTGCTGCGCACTCTGACTACGTGATGACGCCAGTGCAGCTTATTAAGGCAAGGGACTAGACC
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| DNA Sequence for Gene |
>RT94_RS01670
ATGCATTTCACCATTCAACGCGAAGCCCTGTTGAAACCCCTGCAATTGGTGGCCGGCGTGGTTGAACGCCGTCAGACCTTGCCGGTGCTCTCCAACGTAT TGATGGTCGTCGAAGGCCAGCAACTGTCGCTGACCGGTACCGACCTTGAAGTCGAACTGGTTGGACGCGTGCAACTGGAAGAGCCGGCCGAGTCTGGGGA AATTACTGTCCCTGCGCGTAAGCTGATGGACATCTGCAAAAGCCTGCCCAATGACGCGTTGATCGATATCAAGGTCGACGACGCCAAGCTGGTGGTCAAG GCCGGCCGTAGCCGTTTCACCTTGTCCACGCTGCCTGCCAACGACTTCCCTACCGTGGAAGAAGGTCCGGGTTCGCTGACGTTCCAGTTGGGTCAGAGCA AGCTGCGCCGTTTGATTGAGCGCACCAGCTTCGCCATGGCTCAGCAGGACGTGCGTTACTACCTCAATGGCATGTTGCTTGAAGTCAGCGCAGGCGTACT GCGTGCTGTCGCGACTGATGGCCACCGTCTGGCAATGTGTTCGATGACTGCCGATATCGAACATGCTGATCGCCATCAGGTTATCGTGCCGCGCAAAGGT ATTCTGGAAATGGCTCGTCTGCTCACCGAGCAGGACGGCATGGTCAGCATCGTACTGGGTCAGCATCACATCCGCGCAACCACAGGCGAGTTCACCTTCA CCTCGAAACTGGTCGACGGTAAATTCCCTGACTACGAACGCGTGCTGCCAAAAGGTGGTGACAAGTTGGTGCTGGGCGATCGTCAGGCGCTGCGTGAAGC CTTCAGCCGTACCGCAATTCTGTCCAACGAAAAGTACCGTGGTATTCGTCTGCAACTGGCCAGCGGTCAACTCAAGATCCAGGCAAACAACCCTGAGCAG GAAGAAGCGGAAGAAGAAATCGGCGTCGAGTACAACGGTGACTCGCTGGAAATCGGTTTCAACGTCAGCTACCTGCTCGACGTTCTGGGCGTAATGACCA CCGAGCAAGTGCGTCTGATTCTGTCTGACTCCAACAGCAGTGCGCTGGTGCAAGAGTCAGACAATGATGACTCGGCATATGTCGTCATGCCGATGCGTCT GTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCATGTACAGCGCAACCTAGATGTCTCTCAGCCGCATCTCGGTCACCGGGGTGCGCAATCTGCACCCGGTGACCCTCTCCCCCTCTCCGCGTATCAATAT CCTTTACGGCGCCAACGGCAGCGGCAAAACCAGCGTACTGGAAGCCATCCATCTGCTGGGCATCGCTCGTTCGTTCCGCAGCAGCCGTCTGCTTCCAGTC ATCCAGTACGAGCAACCGTCTTGCACGGTCTTCGGTCAAGTCGAGCTTGCCCAAGGCGGTCATAGCAGTCTGGGTGTAGCGCGTGACAGACAAGGTGAAT TCCAGATCCGCATCGACGGGCAGAATGCGCGCAGTGCTGCACAGCTCGCTGAAATTCTGCCGTTGCAGCTTATCAATCCTGACAGTTTCAGATTGCTTGA AGGCGCACCGAAGATTCGCAGACAGTTTCTGGACTGGGGAGTGTTCCACGTGGAACCTCGTTTCATGGCCACTTGGCAGCGGCTCCAGAAGGCCTTGAGG
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| Amino Acid Sequence |
>DNA polymerase III subunit beta
MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLMVVEGQQLSLTGTDLEVELVGRVQLEEPAESGEITVPARKLMDICKSLPNDALIDIKVDDAKLVVK AGRSRFTLSTLPANDFPTVEEGPGSLTFQLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVLRAVATDGHRLAMCSMTADIEHADRHQVIVPRKG ILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQ EEAEEEIGVEYNGDSLEIGFNVSYLLDVLGVMTTEQVRLILSDSNSSALVQESDNDDSAYVVMPMRL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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