Pseudomonas viridiflava LMCA8, RT94_RS01165

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_5, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ACTGACCGGGGTCACACGCATCACCCGGATGCGCTCGTAGGCAATCCCTTTCTCAGGAGTTCTTCATGACCAAGACTGTCATCACCAGCGAAAAAGCCCC GGCGGCCATCGGCCCTTACTCGCAGGCGATCAAGACTGGCAATACCGTCTACATGTCCGGCCAGATCCCTCTGGACCCGAAAACCATGGAGCTGGTCGAC GGCATCGAAGCCCAGATCACTCAGGTCTTCGAGAACCTGAAGTCCGTCGCTGAAGCGGCTGGCGGCTCGTTCAAGGACATCGTCAAACTGAACATCTTCC TGACCGACCTGGGCCATTTCGCCAAGGTCAACGAGATCATGGGCACCTACTTCGCACAGCCTTACCCGGCGCGTGCAGCCATCGGCGTTGCCGCACTGCC ACGTGGTGCGCAGGTCGAGATGGACGCGATTCTCGTCATCGAATAAATCCCCCAGCGGAGCGTTGCTGCGCTCCGCTCTCCCTTAAGGAAGGAATCTGTT
DNA Sequence for Gene
>RT94_RS01165
ATGCGTTCCGCGCTCGCCATTTCACTGCTGGCCGTCGTTCTCGGCGGCTGCTCCAGCTTTGCCGACCGCAACCCGGACGGCACCTGGATCAACCAGACCG CCATCGATGCCGCAGTCAAGCAGGGCAACCTGCGTCAGGCGCTGCTCGCCAACGGTCCGAATCTGGAGTGGCAGATCAACTCCAAGGCCAATCAGGCGGT GTACTCCAACGGCTTCGAGCTGGGTGAAGGCAAGATTGTCAGTGCCGCTGAAGGCAAGCTGCACATCGACTTCTACGGCAACTTCTTCGAAGACCTCAGC GTAAAGGGTGACGAACTGGTTCAGGCAGCCAGCGAATCCGGCCCTGAACAGCACTTCGAAAAACCGAAGAACACCGTACCCGAAGGCGCACAGCCGGGCA GCACCTTTGAAAAAGCGCTGTATGCGGCCTACATGGGCGGCAAATGGACCATCGTCGAAGGCGACGGCCAAGGCAGCACCGTGCAGTTCATGCCGGACGG CAGCGTCCAGGGTCTTCCGGAAAATGATCGCTTCGCGCTGTGCCTGGCTGGCGACTGCGCCGCCATGAGCGGTGAGTACGACAGCATGTGGCTGGAAAAG GCCGAGCAGGGTAATCCCTGGATTTTCGCTCGCAAGGGTAAGCAACTGGAGATTTTCCAGGCGGTGAACAACGCAGGGGCCGATCAGATGCCCGAACTGC GTCCGGGCACTCGCCGCTGGTTGCTTGAGCAGCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCATAGCGTCACCCATAAAAAAGCGCCTTCAAGAGGCGCTTTTTTATTTCGGCTCATTCAGGCCTTGTCGGTGCCCAGCAAAGCCGTATATCCCGCTCG GTAATCCGGATACACCGGTACCCAGCCCAGCGCACGGGCGCGCGCATTGCTGCAGCGTTTGCTGCCGACCCGCTGCACGCTGACGTCGTCAGACCATTCG GTAACGCCCAGGTACTCACGAATCCACGACACCACGTCAGCCAATGCAGCCGGGTCGTCGTCCACGCCCAAGTAGCAGCTCTCCAGTGCAACGCCCCGAT CATCGGCCTCAAGCAGATGCGCCAGCAGACCCGCTGCGTCGTCGGCGTGAATGCGATTGGCGTAGACCGGCGGATCGATCCTGACGCTGTGGCCCTGGCG CACCCGGTTGGACAGATCTGCACGGCCCGGCCCGTAGATTCCGGTCAATCTCACGGCCGTGGCAGGAAGGCCGCTGTTCAGCGCCAGCTGTTCAGCCTCA
Amino Acid Sequence
>lipoprotein
MRSALAISLLAVVLGGCSSFADRNPDGTWINQTAIDAAVKQGNLRQALLANGPNLEWQINSKANQAVYSNGFELGEGKIVSAAEGKLHIDFYGNFFEDLS VKGDELVQAASESGPEQHFEKPKNTVPEGAQPGSTFEKALYAAYMGGKWTIVEGDGQGSTVQFMPDGSVQGLPENDRFALCLAGDCAAMSGEYDSMWLEK AEQGNPWIFARKGKQLEIFQAVNNAGADQMPELRPGTRRWLLEQQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site