Pseudomonas viridiflava LMCA8, RT94_RS21340

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_46, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CTGGTGCTGGGGATTCTTTATGAAAGCTATATTCATCCACTGACGATCCTCTCGACCTTGCCGTCGGCGGGTGTGGGCGCCTTGTTGACCATCTATGTGC TGCGCAGTGAATTCAGCCTGATCTCGCTGCTGGGTCTGTTCCTGTTGATCGGCGTGGTGAAGAAGAACGCAATCATGATGATCGATCTGGCGTTGCACCT GGAGCGGGATCAGGGCATGACGCCTCAGGAATCCATCCGCAGCGCCTGTCTGCAGCGTTTGCGGCCCATCCTGATGACCACCATGGCCGCCATTCTGGGC GCGCTGCCGCTGTTGCTGAGCACCGCCGAGGGCGCCGAAATGCGCCGACCGCTGGGCCTTACCATCATTGGCGGTCTGGTGTTCAGTCAGGTGCTGACGC TCTACACCACCCCTGTGGTTTACCTTTATCTCGACCGCCTGCGTCACCGCTTCAGCCGGTGGCGGGGCCGTCGTACCGATGCCGCTCTGGAAACTCCGTT
DNA Sequence for Gene
>RT94_RS21340
ATGACTGATCGCCCCGCCTTCAAACCCAATCACCGATGGCTGGTCAGGCCGTTTGCCATAGGGCTCTGCGTCATGCTGCTGAGTGCCTGTGCGGTCGGCC CGGATTATCACAAGCCGGATATGGCCACGCCTGCCAGCTTCAAGGCGGCAGCAGGCTGGAAGCAGGCGACGCCACGCGATGACGCAATGGCCAGAGGCGC ATGGTGGGAGGTCTACGACGACAAGGCGCTCAACGCACTGGTCGAACGCTTGAACGCCTCCAACCAGACCGTGGCACAGTACGAAGCTCAGTACCGTCAG GCCCAGGCGTTGATTCGCAGCTCGCGAGCAGCGTTCTTCCCGACCCTTGATCTCTCCGTCGGCAAGACCCGCTCCAGTCAGGGAACCGGCAGCAGTACGT CGGGGAGCAGTAACCTCAACTCCGGCATCCGCGAGACCCACAGTGCCCAGTTGGGTGTCAGTTGGGAGGCCGATGTCTGGGGCAAGCTGCGTCGCGGCCT TGAGGCCGACACGGCCAACGCACAGGCAAGCCTTGCGGATCTGGCGGCCATGCGTCTGAGTCTGCAGTCGGAACTGGTGCAGAACTACCTGCAACTGCGC GTCATCGACGAGCAGAAGCGCTTGCTGGAAGCCACGGTCGATGCCTATCAGCGCTCGTTGACGCTGACCCAGAATCAGTACCGTGCCGGTATCTCGGGGC GTGATGCCGTGGCTCAGGCGCAGACCCAGTTGAAAAGTACCCAGGCCGATCTGATCGATCTGGCGTGGCAGCGGGCGCAATTTGAAAACGCCATTGCCGT GCTGATGGGCATGGCGCCAGCGGACTTCAATCTGCAGGCAACCACCTCCATCCCCAGACTGCCGCAGATTCCTGTCGGTTTGCCTTCCGAGTTGCTCGAG CGCAGACCCGACATCGCCGCCGCCGAGCGTTCGGTGATGGGCGCCAACGCCAATATCGGTGTGGCGAAGGCGGCTTATTACCCTGACTTCACCCTGAGCA TGAGCGGCGGCTATAACAGCAGTACGTTTGCCAACTGGATCAGTTTGCCGAATCGCTTCTGGTCGGTCGGTCCGCAACTGGCCATGACCCTGTTCGACGG GGGGCGACGTTCTGCTGAAGTTGAACGTACCGAAGCCGTCTACGACCAGACCGTTGCCCAGTACCGACAGACCGTGCTCAACGGTTTCCAGGAGGTAGAG AATTACCTCGTTCAGCTCAAGGTCTACGAAGAGGAAGCCGATGTTCGTCAGGAAGCCCTGGTGGCTGCCCGCGACTCCCTGCGCCTGACCAGCAATCAGT ACAAGGCCGGTCTTATCGGCTATCTGGATGTCGTCAACGTACAGGCCACGGCACTGAGCAACGAACGCACGGTGCTGAACGTGCTGCAAAGCCGCCTGAT TGCCAGTGTGCAGTTGATCGCCGCCCTGGGTGGCGGCTGGGATGCGCAAACGGGTCTGACGTCCCAGGACCGTTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
CGGTCCAGGCACGGCAGGCAGGCGCAGGGCGGCAGCGCGGCCCTGCCTGCAATCGAGCAATGAGATGAATAAAATATTTCTATGAGACGATTGATTAAGA TAATGGCGCAATGCCATATTTCCCGACCGTTCGCCGCGACAAACCTCCCCAACTGCGTACAATAGCGCTCATCAGATCGGCAGGGACGCGCTCTTCGAGT TTCAGGTGCGTTCATGTTGGTCGGCAGCTATACCCCTTCGCTTGTCATGATCTCCGTGTTGATCGCGGTGCTCGCGTCCTATACCGCGCTCGATCTTGCC GGCCGTGTCGCATCGGCCAAAGGCCGCGCTGTCCATTGCTGGATTGCCGGCGGCGCAATTGCCATGGGCATCGGCATCTGGTCCATGCACTTCATCGGCA TGCTGGCTTTCGTGCTGCCGTTCAAGCTTGGCTATAACATCCCGCTGACGCTCTGCTCGTTGCTGATTGCCATGCTGTCCTCAGGCTTTGCCCTCTGGCT
Amino Acid Sequence
>RND transporter
MTDRPAFKPNHRWLVRPFAIGLCVMLLSACAVGPDYHKPDMATPASFKAAAGWKQATPRDDAMARGAWWEVYDDKALNALVERLNASNQTVAQYEAQYRQ AQALIRSSRAAFFPTLDLSVGKTRSSQGTGSSTSGSSNLNSGIRETHSAQLGVSWEADVWGKLRRGLEADTANAQASLADLAAMRLSLQSELVQNYLQLR VIDEQKRLLEATVDAYQRSLTLTQNQYRAGISGRDAVAQAQTQLKSTQADLIDLAWQRAQFENAIAVLMGMAPADFNLQATTSIPRLPQIPVGLPSELLE RRPDIAAAERSVMGANANIGVAKAAYYPDFTLSMSGGYNSSTFANWISLPNRFWSVGPQLAMTLFDGGRRSAEVERTEAVYDQTVAQYRQTVLNGFQEVE NYLVQLKVYEEEADVRQEALVAARDSLRLTSNQYKAGLIGYLDVVNVQATALSNERTVLNVLQSRLIASVQLIAALGGGWDAQTGLTSQDR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site