Pseudomonas viridiflava LMCA8, RT94_RS21340
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_46, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGCTGGGGATTCTTTATGAAAGCTATATTCATCCACTGACGATCCTCTCGACCTTGCCGTCGGCGGGTGTGGGCGCCTTGTTGACCATCTATGTGC TGCGCAGTGAATTCAGCCTGATCTCGCTGCTGGGTCTGTTCCTGTTGATCGGCGTGGTGAAGAAGAACGCAATCATGATGATCGATCTGGCGTTGCACCT GGAGCGGGATCAGGGCATGACGCCTCAGGAATCCATCCGCAGCGCCTGTCTGCAGCGTTTGCGGCCCATCCTGATGACCACCATGGCCGCCATTCTGGGC GCGCTGCCGCTGTTGCTGAGCACCGCCGAGGGCGCCGAAATGCGCCGACCGCTGGGCCTTACCATCATTGGCGGTCTGGTGTTCAGTCAGGTGCTGACGC TCTACACCACCCCTGTGGTTTACCTTTATCTCGACCGCCTGCGTCACCGCTTCAGCCGGTGGCGGGGCCGTCGTACCGATGCCGCTCTGGAAACTCCGTT
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| DNA Sequence for Gene |
>RT94_RS21340
ATGACTGATCGCCCCGCCTTCAAACCCAATCACCGATGGCTGGTCAGGCCGTTTGCCATAGGGCTCTGCGTCATGCTGCTGAGTGCCTGTGCGGTCGGCC CGGATTATCACAAGCCGGATATGGCCACGCCTGCCAGCTTCAAGGCGGCAGCAGGCTGGAAGCAGGCGACGCCACGCGATGACGCAATGGCCAGAGGCGC ATGGTGGGAGGTCTACGACGACAAGGCGCTCAACGCACTGGTCGAACGCTTGAACGCCTCCAACCAGACCGTGGCACAGTACGAAGCTCAGTACCGTCAG GCCCAGGCGTTGATTCGCAGCTCGCGAGCAGCGTTCTTCCCGACCCTTGATCTCTCCGTCGGCAAGACCCGCTCCAGTCAGGGAACCGGCAGCAGTACGT CGGGGAGCAGTAACCTCAACTCCGGCATCCGCGAGACCCACAGTGCCCAGTTGGGTGTCAGTTGGGAGGCCGATGTCTGGGGCAAGCTGCGTCGCGGCCT TGAGGCCGACACGGCCAACGCACAGGCAAGCCTTGCGGATCTGGCGGCCATGCGTCTGAGTCTGCAGTCGGAACTGGTGCAGAACTACCTGCAACTGCGC GTCATCGACGAGCAGAAGCGCTTGCTGGAAGCCACGGTCGATGCCTATCAGCGCTCGTTGACGCTGACCCAGAATCAGTACCGTGCCGGTATCTCGGGGC GTGATGCCGTGGCTCAGGCGCAGACCCAGTTGAAAAGTACCCAGGCCGATCTGATCGATCTGGCGTGGCAGCGGGCGCAATTTGAAAACGCCATTGCCGT GCTGATGGGCATGGCGCCAGCGGACTTCAATCTGCAGGCAACCACCTCCATCCCCAGACTGCCGCAGATTCCTGTCGGTTTGCCTTCCGAGTTGCTCGAG CGCAGACCCGACATCGCCGCCGCCGAGCGTTCGGTGATGGGCGCCAACGCCAATATCGGTGTGGCGAAGGCGGCTTATTACCCTGACTTCACCCTGAGCA TGAGCGGCGGCTATAACAGCAGTACGTTTGCCAACTGGATCAGTTTGCCGAATCGCTTCTGGTCGGTCGGTCCGCAACTGGCCATGACCCTGTTCGACGG GGGGCGACGTTCTGCTGAAGTTGAACGTACCGAAGCCGTCTACGACCAGACCGTTGCCCAGTACCGACAGACCGTGCTCAACGGTTTCCAGGAGGTAGAG AATTACCTCGTTCAGCTCAAGGTCTACGAAGAGGAAGCCGATGTTCGTCAGGAAGCCCTGGTGGCTGCCCGCGACTCCCTGCGCCTGACCAGCAATCAGT ACAAGGCCGGTCTTATCGGCTATCTGGATGTCGTCAACGTACAGGCCACGGCACTGAGCAACGAACGCACGGTGCTGAACGTGCTGCAAAGCCGCCTGAT TGCCAGTGTGCAGTTGATCGCCGCCCTGGGTGGCGGCTGGGATGCGCAAACGGGTCTGACGTCCCAGGACCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGGTCCAGGCACGGCAGGCAGGCGCAGGGCGGCAGCGCGGCCCTGCCTGCAATCGAGCAATGAGATGAATAAAATATTTCTATGAGACGATTGATTAAGA TAATGGCGCAATGCCATATTTCCCGACCGTTCGCCGCGACAAACCTCCCCAACTGCGTACAATAGCGCTCATCAGATCGGCAGGGACGCGCTCTTCGAGT TTCAGGTGCGTTCATGTTGGTCGGCAGCTATACCCCTTCGCTTGTCATGATCTCCGTGTTGATCGCGGTGCTCGCGTCCTATACCGCGCTCGATCTTGCC GGCCGTGTCGCATCGGCCAAAGGCCGCGCTGTCCATTGCTGGATTGCCGGCGGCGCAATTGCCATGGGCATCGGCATCTGGTCCATGCACTTCATCGGCA TGCTGGCTTTCGTGCTGCCGTTCAAGCTTGGCTATAACATCCCGCTGACGCTCTGCTCGTTGCTGATTGCCATGCTGTCCTCAGGCTTTGCCCTCTGGCT
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| Amino Acid Sequence |
>RND transporter
MTDRPAFKPNHRWLVRPFAIGLCVMLLSACAVGPDYHKPDMATPASFKAAAGWKQATPRDDAMARGAWWEVYDDKALNALVERLNASNQTVAQYEAQYRQ AQALIRSSRAAFFPTLDLSVGKTRSSQGTGSSTSGSSNLNSGIRETHSAQLGVSWEADVWGKLRRGLEADTANAQASLADLAAMRLSLQSELVQNYLQLR VIDEQKRLLEATVDAYQRSLTLTQNQYRAGISGRDAVAQAQTQLKSTQADLIDLAWQRAQFENAIAVLMGMAPADFNLQATTSIPRLPQIPVGLPSELLE RRPDIAAAERSVMGANANIGVAKAAYYPDFTLSMSGGYNSSTFANWISLPNRFWSVGPQLAMTLFDGGRRSAEVERTEAVYDQTVAQYRQTVLNGFQEVE NYLVQLKVYEEEADVRQEALVAARDSLRLTSNQYKAGLIGYLDVVNVQATALSNERTVLNVLQSRLIASVQLIAALGGGWDAQTGLTSQDR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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