Pseudomonas viridiflava LMCA8, RT94_RS20125

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3172 3234 1.3
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3409 3483 5.3
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3282 3320 0.056
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3243 3311 0.014
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3322 3361 6.1E-6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2792 2820 2.0E-4
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2606 2667 0.0023
Gene3D G3DSA:2.160.20.10 - IPR012334 Pectin lyase fold 52 345 8.7E-103
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3204 3234 0.085
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 4750 4794 250.0
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1125 1164 0.0053
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2761 2785 0.097
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2969 3007 5.1E-6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2056 2093 0.2
MobiDBLite mobidb-lite consensus disorder prediction - - 4796 4814 -
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2719 2758 0.051
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2885 2922 0.91
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2843 2883 3.9E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3029 3069 0.027
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 774 809 0.038
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 897 937 0.0086
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1707 1743 0.9
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 648 685 2.0E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 816 852 7.5E-4
MobiDBLite mobidb-lite consensus disorder prediction - - 4943 4963 -
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2223 2280 0.0012
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2355 2385 0.0021
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3790 3828 2.7
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1086 1122 4.1E-5
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1435 1474 0.016
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1657 1711 6.4E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 524 562 0.11
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 637 699 0.0043
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2294 2347 0.34
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 731 773 0.2
Coils Coil Coil - - 5349 5369 -
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2989 3028 2.4E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1187 1226 0.31
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2351 2389 0.59
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3635 3701 110.0
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2551 2601 0.0025
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2926 2967 1.6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3176 3208 1.8E-4
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 878 956 0.0076
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1211 1280 0.0016
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2900 2958 2.5
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 446 481 0.11
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1001 1042 0.096
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2370 2408 7.8E-6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3768 3809 4.5
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2682 2748 4.8E-5
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1166 1194 0.0075
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 4688 4721 1.7
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3363 3403 1.7E-4
MobiDBLite mobidb-lite consensus disorder prediction - - 4245 4266 -
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2701 2737 1.1E-6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2411 2451 0.0021
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3964 4009 2.1
SUPERFAMILY SSF51126 Pectin lyase-like IPR011050 Pectin lyase fold/virulence factor 59 312 5.96E-59
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2740 2780 0.12
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2600 2635 0.02
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3260 3298 9.6E-5
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2978 3040 0.048
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 483 522 0.001
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 565 584 1.6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2514 2553 1.6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1837 1868 0.065
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1767 1834 0.0021
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 941 977 0.13
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1395 1433 1.1
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2160 2199 0.011
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2330 2369 0.042
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3585 3621 5.5E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2017 2051 9.2
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2906 2937 2.4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1975 2007 0.38
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3042 3103 0.1
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2678 2718 3.1E-6
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2638 2673 2.1
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 383 446 0.096
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2076 2116 7.9E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1664 1698 0.0031
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3449 3482 0.023
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2268 2308 4.2E-8
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3515 3536 5.4
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2422 2484 8.4E-5
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2208 2246 0.0035
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 586 622 0.0018
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2453 2491 0.0012
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2234 2264 5.6
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3316 3352 0.021
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 447 515 0.019
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1932 1973 0.012
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1845 1900 0.0049
Pfam PF05860 TPS secretion domain IPR008638 Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain 55 308 1.0E-57
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3828 3866 5.9E-5
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1345 1401 0.0031
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3586 3630 2.7
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1995 2032 5.9
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1044 1078 0.42
NCBIfam TIGR01901 JCVI: filamentous hemagglutinin family N-terminal domain IPR008638 Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain 82 180 4.9E-17
MobiDBLite mobidb-lite consensus disorder prediction - - 4792 4817 -
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 2835 2896 6.9E-5
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1497 1537 0.0042
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2557 2595 5.3E-5
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1525 1590 0.016
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 4573 4631 23.0
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 3795 3859 3.2
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1538 1575 2.7E-5
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1457 1523 0.0015
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 567 634 0.014
SMART SM00912 Haemagg_act_2a IPR008638 Filamentous haemagglutinin FhaB/tRNA nuclease CdiA-like, TPS domain 64 185 7.6E-47
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 963 1033 15.0
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1354 1392 0.014
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1968 2043 0.028
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1787 1827 0.0014
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 4679 4724 4.3
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2822 2862 2.5E-4
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3674 3708 8.4
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 1130 1198 0.39
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 2118 2159 0.011
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 3809 3845 0.0062
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1872 1908 0.0084
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1476 1505 0.015
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1228 1265 0.0044
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1621 1662 0.085
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 398 438 0.47
Pfam PF05594 Haemagglutinin repeat IPR008619 Filamentous haemagglutinin repeat 812 866 0.0032
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 1745 1785 0.29
NCBIfam TIGR01731 JCVI: filamentous hemagglutinin 20-residue repeat (two copies) IPR010069 Toxin CdiA-like, Filamentous hemagglutinin motif repeats 607 647 1.5

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.