Pseudomonas viridiflava LMCA8, RT94_RS19930

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_45, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
DNA Sequence for Gene
>RT94_RS19930
CCATGCAAGGCGCAGTACCCGGCGACGCCCGGCCGGACCTTGAGGACTACGATTACCCCGGCCTGTTCACCCATCGTGACCGCGGCAGCCATCTGGCCGC CCGCGCTCTGGAGCGCCATCGTCATGATTACCGGCTTGCCGAAGGGCACAGTGATCAGCCACGGCTGGTCAGCGGACATTTCCTGCCACTGAGCGAGCAT CCTCAGGCAGCCTGGAACGCACTCTGGCTGCTGACCGAGATCCAGCATGAAGGTCGTCAGCCGCAAGTGCTGGAAGCGGCAGCATCAAACGAACACTCGG GCGCTGGTGAGTTGCGCCAGGGCTACCGCAACACTTTCAGGGCCATACCCGGATCAGTCACGTTTCGACCATCCCTGCGCCATCCCAAACCGCGCATTGC CGGTAGCCAGACCGCCGTCGTGACTGGCCCGGCGGGTGAAGAGATTCATTGCGACAGGCATGGCCGGGTCAAGGTCCAGTTCCACTGGGACCGCGAAGGT CAGGTCACGGATCAGAGCAGTTGCTGGCTGCGCGTGTCTTCGAGCTGGGCGGGTGACCGCTATGGCGGCATGGTCATTCCAAGGGTCGGCATGGAAGTGC TGGTGACCTTCATCGAAGGCGATCCCGACCGTCCGTTGATCAGCGGCTGCCTGTACCACGCTGAACACACCCCGCCCTACCCGCTGCCCGCCCACCAGAC CCGCAGCGTGTTCAAGACCCTGAGCAGCCCAGGCGGCAAAGGCTCCAACGAACTGCGCATCGAGGACCGCGCCGGTCAAGAGCAGATCTACGTTCATGCC CAGCGCGATTGGGATCAGAACATCCAGCACGACCAGAAAATCCGCGTCGGCCACGAACGGCATGACCGGGTCGAGGCCAACAGCTACAGCGAATTCAAGG CCGAAGAACATCGCACGATCGACGGCAGCCGCCTGACTGAAGTGCGCACGGACGATCACCTGACCGTGAGCGGCAAGCAACACATCAAGGTCGGCGAAGC CCTGCTCGCGGACGTCGGAGATGAGATTCATTTAGAGGCGGGCGATCAGGTGGTTATCGAGGCCGGACTGGAGATCACCTTCAAGGTGGGCGGTAGCTTT ATCAAGATCGATTCGGGAGGAGTGACGGTAAGCGGGCCTTTGGTAAAGCTCAACAGCGAGGGCTCTCCGGGCGTTGGCTCCGGGGTCGCTGCGTTGCTGC CTGAAACACCCAAGGCCGCTGATACATCAGCATCTGGAAACAATACCAAAGGTCCCAACCCTGCAAATACCAAACCTGAGAACACAGAGCAGCCTGTTCT GGAAGCTCTCATCGTTGATGTCTGGGGGGATCCTGCCATGGGAAGCCAACTGCAAATTCTGGCTCCAGAGGAAGATGTATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
ATGAGTTCAGCGACAGCGAAACCCTTCGCGGCACACGCAAGAGAACCGAATACCTTGACGATAGGCGAGCACGTATCGCCTTACATATCCCGCGTCAAGA TGGCGGTGTAGTGCAGATTCCCTTATTGAGTGACACCAAGGCTACAAAAGAACAGGAGGACATCCAGCGCAACACCCTTATCGCTATCGTGCCGCTGGCA AGATTGCCTGGCTACGATGAACCTCGGCAATCACCTCGCGGGGCTTTTCCTCGACGCGGTCGGATTTATGTTTTCTGGAAGAGCGTGCTTTGGAGAGAGC TTGAGGCAGATGGCGAAGGGCAACTGTTCGAAGTGGACATTTCTCATTGGCGAGCCATGGCAGAGGGTAACGGCGATGCGGATCAGCGAGAAGCGATTGG AATAAAGCAGCACGCCATTCTTCTGCCCATGTTGTTGCAGAGCCGGTTTGTCGCCGACCAGTTCATGATGGCCTACAGCGAATTGCCATGGACCTGGGAG
Amino Acid Sequence
>type IV secretion protein Rhs
MQGAVPGDARPDLEDYDYPGLFTHRDRGSHLAARALERHRHDYRLAEGHSDQPRLVSGHFLPLSEHPQAAWNALWLLTEIQHEGRQPQVLEAAASNEHSG AGELRQGYRNTFRAIPGSVTFRPSLRHPKPRIAGSQTAVVTGPAGEEIHCDRHGRVKVQFHWDREGQVTDQSSCWLRVSSSWAGDRYGGMVIPRVGMEVL VTFIEGDPDRPLISGCLYHAEHTPPYPLPAHQTRSVFKTLSSPGGKGSNELRIEDRAGQEQIYVHAQRDWDQNIQHDQKIRVGHERHDRVEANSYSEFKA EEHRTIDGSRLTEVRTDDHLTVSGKQHIKVGEALLADVGDEIHLEAGDQVVIEAGLEITFKVGGSFIKIDSGGVTVSGPLVKLNSEGSPGVGSGVAALLP ETPKAADTSASGNNTKGPNPANTKPENTEQPVLEALIVDVWGDPAMGSQLQILAPEEDV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site