Pseudomonas viridiflava LMCA8, RT94_RS19045
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_45, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCTTGAGCAGCAACTGGCGTCTGCGGGTTTCAGTCTGCAACACAGCGAGATTCTTGCACCTGCTGACGGCATCGCCGTAAACCTCGGCGTACACACGGAA GGCGCCGTGGTGCGCGCCGGTCAGACCCTGCTGGAGGTTGTCCCGCAAGGCACCCGGCTCGAAGTCGAAGGCCGCCTGCCGGTCAACCTGATCGACAAGG TCGGCAGTCATCTGCCCGTGGACATTCTGTTCACGGCCTTCAACCAGAACAGCACGCCCCGGGTAACGGGCGAGGTGAGTCTCATATCGGCCGACCAACT GGAAGACGAGAAAACCGGCCAGCCCTATTACGTCCTGCGCACCTCGGTAAGTGATGCGGTGATGGAGAAGCTCAACGGCCTGGTGATCAAGCCCGGTATG CCTGCAGAGATGTTTGTACGCACCGGCGAGCGTTCACTACTCAATTATCTGTTCAAACCTTTGCTGGATCGTGCCGGCTCCGCGTTGACCGAGGAATAGG
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| DNA Sequence for Gene |
>RT94_RS19045
ATGATCCACTTGACCCGTAAAGCTGCCGCGCTGGCAGCCATGTTGCTCTGCGTCTCTCCCGCAAGCCATGCCCTGGGGCCGTTTCAGATCTACGAGCAGG CGCTGCGCAATGATCCGGTTTTTCTTGGTGCGCTGAAGGAGCGTGATGCGGGGCTGGAAAATCGTGCCATTGGCCGCGCAGGCCTGCTGCCCAGAGTGTC GTACAACTACAACAAGGGGCGTAACGACTCCAAAGCGACCTTGAAGGGCGGGCGTGAAGACACCACCGATCATCGTCATTACAACAGTTTCGGTTCCAGC CTCACGATCCAGCAGCCCTTGCTCGATTATGAGGCCTACGCTAATTACCGCAAAGGCGTCGCTCAGGCGTTGTTTGCCGATGAGACCTTTCGCGGCAAAA GTCAGGAACTGCTGGTTCGGGTTCTGACGGCCTACACCCAGGCATTGTTCGCTCAGGACCAGATCAATATCGCCCAGGCCAAGCAACAGGCTTTCGAGCG TCAGTTCGAACAGAACCGACAGATGTTTCAGCAAGGCGAGGGCACTCGCACCGACATTCTCGAAGCCGAATCGCGCAACGAACTGGCGATTGCCGAGCAG ATCGAAGCCCGCGATGAGCAGGATGCTGCCTTGCGTGAACTGGGCGCTCTGCTGGGCGAACAGGCGATCTCCATCGAGCAGCTGGATCCGCTCAGGGACA GCTTTCAGGCCATGGTGCTGGAACCGTCGAGCTACAGCGAGTGGCACGCGCTGGCAATGGCCAACAGCCCGATTCTCGCCTCGCAACGTCAGGCACTTGA AGTGGCTCGTTACGAAGTGGAGCGTAACCGTGCCGGTCATCTGCCTCGGGTCAATGCATACGCGAGCATTCGCCAGAACGAGTCCGACAGTGGCAATACC TACAACCAGCGTTACGACACCAATACGGTGGGCATCGAAGTCAGCCTGCCGCTTTACGCAGGCGGTGGTACCAGCGCTTCGGTGCGTCAGGCCAACAGCG TGAGGGAGCAGGCGGAGTACGAGCTGGAAGGCAAGACCCGGGAAACCCTGATCGAACTGCGTCGGCAATTCAATGCGTCCACTTCCGGGGTGAATAAACT GCGCGCCTATCAAAAGGCGCTGGTGTCGGCGCAGGCGCTGGTCGAGTCGACGCGTCAGAGCATTCTGGGTGGCGAGCGCATCAACCTCGATGCGCTCAAC GCCGAACAACAGCTCTACAGCACGCGCCGCGACCTGGCGCGCGCTCGTTACGACTACCTGATGGCCTGGATCAAGTTGCACTATCACGCAGGCACCTTGC GCGATACCGATCTGGCGCGCATCGATGAGGCATTCGTGCAGCCGCGTTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGAGCGTCAGGCGGTTTTGCCGAAACGCTTGAGCGAGAATGCCGACAGGTCCACATCGCTGGTGCCGCGCAGACAACGCTGCGCCAGCGCCAGCCCCAG ACCAGCGGAATGCTTGAAGCCGTGTCCTGAGCAGGCCGAGACCACGGTCACGTTCTTCAGGTGCGGGTGGTCGTCAATGATGAAATGGTAGTCCGGCGTC ACGGTGTAGGCGCACACCGATGACTTCACCACGTCTGCCTTTATGCCCGCAATCCTGCCGCTGACCTGCGTTCGGAACATCGTCTGTTCGTCCTCGGCAC TGACGCTGCGGTCCAGCTCGCAGGCCTGTGACGCATGCAGATACTGCTCAGTGGCAATCTTCATGCTGCCTTCACCGGGTAAGGGCGGGAAGCCGTAATT GATATCCACCTCGCCAGGGCCGTGGGTCAGGATGAAGCTGGGCGATACCGGGGCGAAGGCGGCAGTGTCTTCCAGTGCGAACCAGAACAGCTGCTGCCGA
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| Amino Acid Sequence |
>peptidase
MIHLTRKAAALAAMLLCVSPASHALGPFQIYEQALRNDPVFLGALKERDAGLENRAIGRAGLLPRVSYNYNKGRNDSKATLKGGREDTTDHRHYNSFGSS LTIQQPLLDYEAYANYRKGVAQALFADETFRGKSQELLVRVLTAYTQALFAQDQINIAQAKQQAFERQFEQNRQMFQQGEGTRTDILEAESRNELAIAEQ IEARDEQDAALRELGALLGEQAISIEQLDPLRDSFQAMVLEPSSYSEWHALAMANSPILASQRQALEVARYEVERNRAGHLPRVNAYASIRQNESDSGNT YNQRYDTNTVGIEVSLPLYAGGGTSASVRQANSVREQAEYELEGKTRETLIELRRQFNASTSGVNKLRAYQKALVSAQALVESTRQSILGGERINLDALN AEQQLYSTRRDLARARYDYLMAWIKLHYHAGTLRDTDLARIDEAFVQPR
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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