Pseudomonas viridiflava LMCA8, RT94_RS18950

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_43, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
ATCCCGGAACTAACCCGGAACAACCCCCTCAAAAAGACCGCGTTCGCGAAGGCGCTGCTCGTCATGAACGGGTTCATGACCGGTTTTCAGGCCCGAGTGC CTGTGCCCTGCTCTGCTACGCTGGAGCCGCACCGCCCGCAGCATGGGCCTTCACGCAAGCGCTCGACGCCCGGCACCGACATGCCCATACCCATCAGCGC CATAGGCCTCGAGCAGCACAGCCAGCAGACGTTTTTGGCCGTTTTCTGGCTGCTCCACCCCTGCAGAAGTGCGCTTGCACGTTGGAATAAATCTGTAAGC GACCTTGCGCACACTGGATGCGACCCCGCCTGTACTGGATACGACGCCCCCAGTATGCGTTTGATTTTGCCTGTTACATGATCGGCCTCGACTCGATCGC CAGGCGCAGTGATGGAGCTTCGCGAAATGCATTGCCAACACATAAGTCGCGTCAGCGCTCACCTGCTGATGACCAGAAGAAACTCACAGGAGTCCACCCC
DNA Sequence for Gene
>RT94_RS18950
ATGAAAGCTTCCAAATCGTTGCTGTTGGCCGCCACGCTCTGTACCCCGATGCTGGTCCAGGCCGCCGAACCAGAGGCCTGTCATACCGTGAACTTCTCCG ATGTCGGCTGGACCGACATCACCGTCACTACCGCAGTGACCAGCGCCGTACTCGAATCCCTCGGCTACAAGACCAAGACCACCATGATCTCCGTTCCCGT GACCTACAAGTCTCTGGCGGACGGCAAGAATATGGACGTGTTTCTGGGCAACTGGATGCCGACCATGGAAAACGACATCAAGGCTTATCGCGAAGCCGGC ACCGTCGAAACCGTTCGAGCCAACCTGGAAAACGCCAAGTACACCCTCGCTGTACCTGAAGCGCTCTACAACAAGGGCCTGAAAGACTTTTCCGACATCG CCAAATTCAAGAAGGAACTGGGCGGCAAGATCTACGGCATCGAGCCTGGCAATGACGGCAACCGCCTGATCCAGAGCATGATCGACAAGAACGCCTTCGG CCTGAAAGACGCAGGTTTCAAGGTGGTCGAGTCCAGCGAGGCCGGCATGCTGTCGCAGGTGGATCGTGCGACCCGCCGCGACACCGACGTGGTCTTCCTG GGCTGGGAACCGCACCCGATGAACAAGCGCTTCAAGATGAAGTACCTGACCGGTGGCGATGAGTTCTTCGGCCCCAACTTCGGTCAGGCGACCATTTACA CCAACACGCGCAAGGGCTACACCCAGGAATGCAGCAACGTAGGCCAGTTGCTCAAGAACCTGTCGTTCACACTGGACATGGAAAGCACGCTGATGGGCAA CGTTCTGGAAGACAAGACCAAGCCTGATGTTGCCGCCAAGGCGTGGATCAAGAAAAACCCTCAAGTGCTCGACACCTGGCTTGCCGGTGTGACCACTGTT GACGGCAAACCGGGGCTGGAGGCTGCCAAGGCCAAGCTGACCCAGTAA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCCGGCGGCAGGCGGGCAAGTCCCGCCTGTTGCTTTCATTTTTCTCCGCAAGCGGACAATCACTATCATGCTGACTGATCATAAAATCCCTCTGGGCGAG TACATCGCGGCGTTCGTCGACTGGCTGACGCGTAACGGCGCCGACTACTTCGATGCGATTGCCTCGACACTGGAAATGATGATCCACGGGCTGACCTTCG CCCTCACCTGGTTCAACCCGTTCGTACTGATTGGCCTGATCGCCGCACTCGCACACTTTATCCAGCGCAAATGGGGCCTGACGGTCTTCGTCATTCTCTC GTTCCTGCTGATCCTGAACCTGCATTACTGGCAAGAAACCATGGAAACCCTGGCGCAGGTGCTGTTCGCCACGATGGTCTGTGTCGTGATCGGCGTGCCG CTGGGCATCATTGCCGCGCACAAGCCGATGTTCTACACGGTCATCCGCCCGCTGCTCGACCTGATGCAGACGGTGCCCACTTTCGTTTATCTGATTCCAA
Amino Acid Sequence
>glycine/betaine ABC transporter substrate-binding protein
MKASKSLLLAATLCTPMLVQAAEPEACHTVNFSDVGWTDITVTTAVTSAVLESLGYKTKTTMISVPVTYKSLADGKNMDVFLGNWMPTMENDIKAYREAG TVETVRANLENAKYTLAVPEALYNKGLKDFSDIAKFKKELGGKIYGIEPGNDGNRLIQSMIDKNAFGLKDAGFKVVESSEAGMLSQVDRATRRDTDVVFL GWEPHPMNKRFKMKYLTGGDEFFGPNFGQATIYTNTRKGYTQECSNVGQLLKNLSFTLDMESTLMGNVLEDKTKPDVAAKAWIKKNPQVLDTWLAGVTTV DGKPGLEAAKAKLTQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site