Pseudomonas viridiflava LMCA8, RT94_RS18080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_38, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TGGTGTCGAAGAAGTCCGCGCCTGGACCGTCCGCGTCGGTGCCACCGCACCTCAGGCCGCAGGCGTCATCCACACCGATTTCGAAAAAGGCTTCATTCGC GCCGAATGCGTCGCCTACGACGATTTCATCCAGTACAAGGGTGAAGGCGGCGCAAAGGAAGCGGGCAAATGGCGCCTGGAAGGCAAGGACTACATCGTCA AGGACGGTGACGTGCTGCACTTCCGTTTCAACGTGTAACCAAACAGGGTCATTCGAAGACTCTGCTCCCTCATTCGAGTGATTACTGCAAAGCCCCTTAA CCGGGGCTTTTGCATTTCTGCTGCCCCTGAATTATTTGATGGGGATCACATATCTTTCTATGTAAAATGCGCACTTTCATGTTGCCATCACTGCGTCTGG GTGAACATTTTTTCAGACTGGCACTCAATGGTTGCGACATAATCCAGATCAACTCCACGGACCGGGCAAAGCCTTGTCTCGAACCAAGGTGAATATTCTC
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| DNA Sequence for Gene |
>RT94_RS18080
TTGAAGATCTTAGTAACAGGTGGCGCTGGTTTCATTGGCTCGGCAGTTATCCGCCATATCATTTCCAATACAAATGATTCGGTCATCAACGTCGACAAGC TGACCTATGCGGGCAACCTCGAGTCGCTTCAATCGGTTGAAGACAGCGAGCGCTATGCGTTTGCGCACGTGGACATCTGTGACCGTGAAGCGATTGACAA GGTGTTCCAGGAACATCAGCCAGACGCAATCATGCACCTGGCCGCCGAATCCCATGTAGACCGCTCCATCACCGGCCCGTCCGAGTTCATCCAGACCAAC ATCATCGGCACTTACACTCTGCTTGAAGCGGCACGTGCCTACTGGAACCAGCTGGACGAAGCACGCAAGAGCAACTTCCGTTTCCACCACATTTCGACTG ACGAAGTGTATGGCGACCTGGAAGGCCCGGAAGACCTGTTCACCGAAACAACACCGTATCAGCCAAGCTCGCCCTACTCGGCCAGCAAGGCAAGTTCCGA CCACCTGGTTCGTGCCTGGAGCAGAACCTATGGTTTGCCTACCCTGGTCACCAACTGCTCGAACAACTACGGCCCGTGCCACTTCCCCGAGAAGCTGATC CCGCTGATCATTCTCAACGCGCTGGAAGGCAAGCCGCTGCCGATCTACGGCAAAGGCGATCAGGTTCGTGACTGGCTGTACGTCGAAGATCACGCTCGCG CCCTGTACAAGGTCGTGACCGAAGGCGAGATCGGCGAGACCTACAACATTGGCGGCCACAACGAAAAGCAGAACATCGAAGTCGTCCACACGGTCTGTGC CCTCCTCGACCAACTGCGTCCGGATTCGGCTTACCTGCCACACGCAAGCCTGATCACTTACGTTCAGGATCGTCCTGGCCACGATCTGCGCTACGCTATC GACGCCAGCAAGATCCAGCGTGAGCTGGGCTGGGTTCCGGAAGAGAGCTTCGAGTCCGGCATCCGCAAGACGGTGGAGTGGTACCTCAACAATCCGGAGT GGGTTGCTCACGTGAAAAGTGGCAGCTACCAGCAATGGATCGACAAGAACTACACAGCTCGTGCCGATAAATAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
ATGAAAATTCTTCTGCTGGGTAAAAACGGCCAGGTGGGCTGGGAGCTGCAACGCTCTCTCGCCGTGCTGGGCGAAGTCATTGCTCTGGACCGTCAGGTGG CCTCGACGGCCTATGGCGAGATTTCCGGTGACCTGTCAAACCTCGACGAGCTGCGCAAGACGATTCGTCAGGTTCAGCCGCAAGTGATCGTCAATGCTGC CGCCTACACGGCCGTGGACAAGGCTGAAACCGAGCAGGCACTGGCCCGCACGGTAAATGCGCTGGCCAGTCAGGTCCTGGCAGAAGAAGCGCTCCAGCTG GATGCATTGCTGGTCCACTATTCGACCGACTATGTCTTCAACGGAACCGGCAGCCAGGCGTGGAAAGAGACCGATGCAGTCTCGCCGGTCAATTATTACG GCGCGACCAAGCTCGAAGGCGAACAACTGATCGTTGCATCGGGCTGCAAGCACCTGATCTTCCGCACTAGTTGGGTCTATGCCGCACGAGGCAACAACTT
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| Amino Acid Sequence |
>dTDP-glucose 4,6-dehydratase
MKILVTGGAGFIGSAVIRHIISNTNDSVINVDKLTYAGNLESLQSVEDSERYAFAHVDICDREAIDKVFQEHQPDAIMHLAAESHVDRSITGPSEFIQTN IIGTYTLLEAARAYWNQLDEARKSNFRFHHISTDEVYGDLEGPEDLFTETTPYQPSSPYSASKASSDHLVRAWSRTYGLPTLVTNCSNNYGPCHFPEKLI PLIILNALEGKPLPIYGKGDQVRDWLYVEDHARALYKVVTEGEIGETYNIGGHNEKQNIEVVHTVCALLDQLRPDSAYLPHASLITYVQDRPGHDLRYAI DASKIQRELGWVPEESFESGIRKTVEWYLNNPEWVAHVKSGSYQQWIDKNYTARADK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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