Pseudomonas viridiflava LMCA8, RT94_RS14295
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_29, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGATGCGGTCTGCGATCTTCAACAGGACCAGCGAGCGGGCCTGCACCGAGGTCGAGCCCCAGGCTTCTGCGGCTGCGTGGGCGGCGTCGAGCGCCTTGTC GATGTCTTCGGCGGTGGAGCGGGGGAATTCGGCGATGGCCTTGCCGGTAACGGGCGAGGTGTTGGTGAAATACTGACCTTTGACCGGAGCGACAAACTCG CCGCCGATGTAGTTACCGTAGCGTTCCTTGAAATTGACGATGGCGCCTTCGGTACCGGGATGAGCGTAACGCATGGTATGTCTCCTGGTTCTTGTTGTGA GGAAGTCTGTATCGATTCAGCTTTCAAACATCTGGCAGCAGGTTATCAAGAGTAGGCTATTTGCCTCGCCTTCGGGACCTGAACTTTAGCCTCATGTCTG TGCGCTCGACCAGACCCTGAACGACGTGACCACGGACAAACTCTGGGTGCCATTTCACCGTCCCTACGTTAACCTGCCGGGATGTTCTGAGAGGTTGGTC
|
|
| DNA Sequence for Gene |
>RT94_RS14295
ATGCACATTCATATCCTTGGTATCTGCGGCACATTCATGGGTTCGCTGGCGGTGCTCGCCAAAGAGTCGGGGCATCGGGTCACGGGCTCCGACGCCAACG TCTATCCACCCATGAGTACGCAGCTCGAAGCCCAGGGCATCGAACTGACCCAGGGTTATGACCCTGCGCAGCTCGATCCTGCGCCGGACCTGATCGTGAT CGGCAACGCCCTGTCGCGTGGCAACCCTGCGGTCGAGTATGTCCTGAACAAAGGTTTGCCTTATGTGTCCGGCCCGCAGTGGCTGGCGGACCATGTGCTG CAAGGTCGCTGGGTTCTCGCCGTGGCGGGTACGCACGGCAAGACCACTACCAGCAGCATGCTGGCCTGGGTGCTCGAACACGCAGGCATGAGCCCCGGCT TCCTGATTGGCGGTGTCCCGCAGAATTTCGCAGTGTCGGCGCGTCTGGGTGAAACACCGTTCTTTGTGGTCGAGGCTGACGAGTACGACAGTGCCTTCTT CGACAAGCGCTCCAAGTTTGTCCACTACCGCCCGCGCACCGCAATTCTCAACAACCTTGAGTTCGATCACGCGGACATCTTCCCGGATCTGTCAGCCATC GAGCGCCAGTTCCATCATCTGGTGCGCACCATTCCGAGCGAAGGTCTGGTGATTCATCCGACTACAGAACCTGCGTTGTCGCGTGTCATCGAGATGGGTT GCTGGACACCCGTACAGACCACCGGGCAGGGCGGCCAATGGCAGGCCCGTCTGTTGAGCGAAGACGGCTCGCGTTTTGAGGTGATCTTTGAAGGCCAGGT GCAGGGCACGGTCGAGTGGGACATGACGGGACAGCACAACGTAGCCAATGCCCTGGCGACCCTGGCGGCAGCGCGTCATGTGGGCGTGGTGCCTGCGCAG GGCGTCGAAGCGCTCAGTGCGTTCAAGAGCGTCAAGCGACGCATGGAGAAGGTTGCCGAGGTACATGGCATCACGATCTATGACGACTTTGCTCACCATC CGACAGCGATTGCCACGACGCTGGACGGTCTGCGCAAGAAGGTCGGCGACGCTTCGATCATTGCCGTGATCGAGCCGCGTTCCAACTCCATGAAGCTCGG CGCACACCGCGACGGTCTGCCGGAAAGCGTACAGCAGGCCGATCAGGTGGTCTGGTATGCGCCTGCCAATCTGGGCTGGGACCTAGGCGCCACAGCGGCC GAGTGTTCGGTGCCTGCGGTGGTCTGCGATTCGCTTGAAGCGATCATTGCGCGGGTCAAGAGCCAGGCTCAACCGGGCACGCATATCGTCATCATGAGCA ACGGCGGCTTTGGCGGCCTGCATGGCAAACTGGCAGAGGCCTTGAAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCGGACCAGAGCGCATTACCGTCGCCATGACCGGCGCCTCGGGCGCGCAATACGGCCTGCGTCTGCTGGACTGTCTGGTGCGTGAGGATCGGGAGGTGCA CTTTCTGATCTCCAAGGCGGCGCAATTGGTCATGGCGACCGAAACCGATGTGCGCCTGCCACCCAAGGCGATGATGATGCAGGCTTTCCTCACCGAGTAC ACCGGTGCGGCGGCGGGGCAGATTCGGGTCTATGGCCGCGATGACTGGATGTCGCCAGTGGCCTCGGGGTCGGGCTCGCCCAGCGCGATGGTGGTGGTGC CCTGTTCGACCGGCACGCTGTCGGCGATTGCGACCGGCGCCTGCAACAACCTGATCGAGCGAGCGGCCGACGTGACGCTGAAAGAGCGTCGTCAGTTGAT TCTGGTACCACGCGAGGCGCCGTTCTCCAGCATTCACCTGGAGAACATGCTTAAGCTGTCGAACATGGGCGCGGTGATCCTTCCCGCATCGCCCGGCTTC
|
|
| Amino Acid Sequence |
>UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase
MHIHILGICGTFMGSLAVLAKESGHRVTGSDANVYPPMSTQLEAQGIELTQGYDPAQLDPAPDLIVIGNALSRGNPAVEYVLNKGLPYVSGPQWLADHVL QGRWVLAVAGTHGKTTTSSMLAWVLEHAGMSPGFLIGGVPQNFAVSARLGETPFFVVEADEYDSAFFDKRSKFVHYRPRTAILNNLEFDHADIFPDLSAI ERQFHHLVRTIPSEGLVIHPTTEPALSRVIEMGCWTPVQTTGQGGQWQARLLSEDGSRFEVIFEGQVQGTVEWDMTGQHNVANALATLAAARHVGVVPAQ GVEALSAFKSVKRRMEKVAEVHGITIYDDFAHHPTAIATTLDGLRKKVGDASIIAVIEPRSNSMKLGAHRDGLPESVQQADQVVWYAPANLGWDLGATAA ECSVPAVVCDSLEAIIARVKSQAQPGTHIVIMSNGGFGGLHGKLAEALK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|