Strain | Pseudomonas viridiflava strain LMCA8 contig_29, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CCGGCGTTGCCAGCCGTTACGTCGGCCTGTACATCGGTGCCGTGCTGTTCATGCTGGGACTGTTTCCGCACATCGGCGCCATCGTCCAGCAGATTCCCAA ACCGGTACTGGGCGGCGCAACGCTGGTGATGTTCGGCAGCGTCGCGGCGGCAGGCGTACGGATTCTGGCCCAATCGCCGCTGGATCGGCGCAGCATGCTG ATCATTGCGACCTCATTCGGAGTAGGCCTGGGCATCGCCTCACAGCCCGCGCTGCTCCACCAGATGCCCAAGCTCGTGCAGAACCTGTTCGACTCGGCCA TCACCAGCGGAGGCATCACGGCCATTCTAATGTGCCTGTTGATCCCTGAAAGCAAAGCCTGCGCCGACGTACGGACAACTGGCCAGGAAGCCGAACCCTT TGAGCCTCAACGATAATTTTCCAGTGCCTGTGCTTGCGGGATGGCCGCAGGTGCGTTATCTGTTCGTCCGTTGCGTCCCCTGACCTGCCCGGAATCGCCC
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DNA Sequence for Gene |
>RT94_RS13745
ATGACCCTCCAAGTCCCTGCGCACAACGCCCACGTTGCCAAGCCCGCCAGCCGCATTCGTCAGAAAAATGAAGAAGCGATCATCAAGGCCGCCGAAGACG AGTTTGCACGTCACGGTTTCAAGGGCACCAGCATGAACACCATCGCGCTGAAGGCCGGGCTGCCCAAAGCCAACCTGCACTACTACTTCACCAACAAGCT GGGGCTGTACATTGCAGTGTTGAGCAACATCATCGAACTGTGGGACAGCACCTTCAATACCCTCAGCGTTGAAGACGATCCCGCAGAAGCGCTGGCACGG TACATCCGCGCCAAGATGGAGTTTTCGCGCCGCCAGCCTCAGGCGTCGCGCATCTTTGCGATGGAAATCATCAGCGGCGGCGAATGCATGAGCGAATATT TCAGCCAGGATTACCGCTTGTGGTTCCAGGGCCGGGCAGCGGTTTTCCAGGCCTGGATCGACGCCGGCAAGATGGACCCGGTCGACCCGGTGCATCTGAT CTTCCTGCTGTGGGGCAGCACCCAGCACTACGCCGACTTCGCGTCCCAGATATGCCGCGTCACCGGGCGTACCCGCCTGACCAAACAGGACATGGACGAG GCCAGCGAAAACCTGATCAGGATCATCGTCAAAGGTTGTGGGCTAAAGCCGCCAGCCTTGTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
AATTCGCACCTTGTCGCCAGCCGGATGCACGCATGCCTTTTACCCTTGCTGGCCCTTGCGAGTTTCGTGAAGAAATCCGCAAGAGCCGCTTCATCACCCT CGCCGCCCCCATCAGCAGCCCGACCGACGCGCAGGCGTTCATCGACCAGCACAGTGACCTGAACGCCACTCACAACTGCTGGGCCTGGAAACTCGGTGAT CAATACCGCAGCAATGACGATGGCGAGCCGGGCGGTACCGCAGGCCGCCCGATTCTTGCGGCAATCGAGGCGCAGGGTTTCGATCAGGTCGTGGTGCTGG TCATTCGCTGGTACGGCGGTATCCAACTGGGAACCGGTGGTCTGGCTCGTGCCTACGGTGGCGGCGCCAACAAATGCCTGCAGCAGGCAGCACGTGTGGA GCTGGTCAACCGATTGTCTTTCAACCTTGAGTGCAGCTTCAGCGAACTGGCGCTGGTCAAGGTTCGTCTGGCTGAATCGAGCGGCCTGGTTGAAGCCGAA
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Amino Acid Sequence |
>TetR family transcriptional regulator
MTLQVPAHNAHVAKPASRIRQKNEEAIIKAAEDEFARHGFKGTSMNTIALKAGLPKANLHYYFTNKLGLYIAVLSNIIELWDSTFNTLSVEDDPAEALAR YIRAKMEFSRRQPQASRIFAMEIISGGECMSEYFSQDYRLWFQGRAAVFQAWIDAGKMDPVDPVHLIFLLWGSTQHYADFASQICRVTGRTRLTKQDMDE ASENLIRIIVKGCGLKPPAL
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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