Pseudomonas viridiflava LMCA8, RT94_RS12120
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_23, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCGATCTGCGCGCGCTGATCCTCAAGGCAAGGCCGCAGGTCATCGTGATGCCGCACCCGGCCATCGACCCGCATCCTGACCACATTTGTGCGCAGGCCGC TGTGCGTGAGGCGCTGGCCGGGCTTGAATGGCAGCCTGAGGTGATCTTGGGTTACGCCAATCACTTGCACGACAACGACCGCTGGCCCATGGGCGATGCC TACACCGGCATTAGCCTGCCGCCCGTCTTCGATGCCGAATTGAAGCTTGAGCCCTACAGCCTTGAGCTGTCGGTGCCGACACAGCGCGACAAAGCCATGG CGCTGGGCATGATGCATGACCTGCAACCACCGATGCCGGGCAAACGTCGAGTGCGCCGCTGGCTGCAGCAGTTGCTCGCCGGGCGCCGCTGGCCGGCTGA GGGTGAAAACGAATTTTTCCGAAAGGCTGTGCGACGACACGAGTTGTTCTGGCGTAGCCGTGATTTCTGATTCAGCAGGCGCAGTACTGCAAGGAAAACA
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| DNA Sequence for Gene |
>RT94_RS12120
ATGAAAGTCCTACTTCTGGTTCAGAAAGAGCAGCGTGCGATTCTGGATCGTCTTTACGACGGCATCGCGTCAAGCTGCGACTGCGACGTGCGCTGGCTGG ACTCCAACGACCAGCGCAACCTGCGCAGCTATTTCCGGCGTGAAATCGATGTGAGCCGCTACGACCGGATCGTGTTCTTTCTGCGCTTCAAGCAGGAAGT GCGTCAGGTGGCCTTCATTCGTACGATTCCGAATCTGGTCATTCTTGAGCACGACGCCTACCAGAACTACATTGCCTGCAAGTACACCGGCAAGTTCAGC GCGCACTATCGCAAGCTGCCCTGGGTTCGGGTGTTGTGCTCGGGCTTCATGGTCAGCGAGCGGCTGCGTGAGGAAGGCTTCGACGCGGTGTTCGTGCCCA AGGGCTACGATCAGACGCTGTTGCAGGCGCAGAACCGCGAGCGTGACATCGAGTTGGCGTTCGTCGGCAGCACCAACAGCGTCGCCTACAGCGGCCGCAA GGCGCTGCTCGACGAGTTGGGGCAGCATGAGAATCTGCTGGTCACGCGCACCAAGTCGGGCGAGGAATACTGCGACACGCTGAACCGCATCCGCTTTTTC GTCAGTGCCGATGTCGGCATGGGCGAATACATGATTAAAAACTTCGAGGCCATGGCCTGCGGCTGCGTGCTGCTTGCCTTCGATCAGGGCGCTGAAGAAA ATCGCGCGCTGGGCTTCGTGGATATGCACAACATTGTGCTGTACCGCGATATTCCCCAGCTTCGTGAAAAGCTGGCGCAACTGCGCGCGGCCCCGGCACT GGCCGATGAAATATCCCGTAACGGACAGGCGCTCGTCGAGGAGCGCTATACGTTTCACGCTTTGGGCAAAGCCATTGTCGAACACATGCGTCCACCGCTG CGGCCGATGCCGGCTGCGAGCTGGGTCGACCGTCTGCGCTCGCGTTGGGCATGGTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
TGCTTCTTGAACTTTCAATGATTGGGAACAGATGATGGTATTCAGCGAAAATAGCGACATCACGCTGGTGGTGACCAGTTGCGGGCGATTCGATCTGTTG AAGCGCACCCTGGAAACCTTCGATCGTTACAACACCGCCGCCATCCGCCATGTGCTGATCACTGAAGATTCAGGAGACGTTCAGGTCGAGGCCTGTATTC CTGAGCACTGGCGCGCACACACCCGCTTCCTCATCAACAATCCCAAGTTGGGACAGATGCGCTCGGTGGACGCCGCTTATGCGCTGATCGAGACGTCCTG GGTGTTTCATTGCGAAGATGACTGGGATTTCTACCGCCCGCACTTCATCGAAGAGTCGATGATCCTGCTGGAGAACGACCCGCAGGCGCTGCAGGTGTGG TTGCGCAGCTTCCATCATGATCTGCAGATTCACAGCCCCTACATCTATTTGAACGAGCGCGAAGTGGTTCAGGGCATTCCTTTCTACAAGCTGGGTTCGC
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| Amino Acid Sequence |
>hypothetical protein
MKVLLLVQKEQRAILDRLYDGIASSCDCDVRWLDSNDQRNLRSYFRREIDVSRYDRIVFFLRFKQEVRQVAFIRTIPNLVILEHDAYQNYIACKYTGKFS AHYRKLPWVRVLCSGFMVSERLREEGFDAVFVPKGYDQTLLQAQNRERDIELAFVGSTNSVAYSGRKALLDELGQHENLLVTRTKSGEEYCDTLNRIRFF VSADVGMGEYMIKNFEAMACGCVLLAFDQGAEENRALGFVDMHNIVLYRDIPQLREKLAQLRAAPALADEISRNGQALVEERYTFHALGKAIVEHMRPPL RPMPAASWVDRLRSRWAW
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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