Pseudomonas viridiflava LMCA8, RT94_RS09890
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0009306 | protein secretion |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30531
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Cellular Component | GO:0016020 | membrane |
Inferred from Sequence Model
Term mapped from: InterPro:PTHR30531
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Gene3D | G3DSA:3.40.1690.10 | secretion proteins EscU | IPR029025 | Type III secretion system substrate exporter, C-terminal | 8 | 85 | 9.4E-23 |
| SUPERFAMILY | SSF160544 | EscU C-terminal domain-like | IPR029025 | Type III secretion system substrate exporter, C-terminal | 9 | 85 | 4.58E-20 |
| FunFam | G3DSA:3.40.1690.10:FF:000003 | Flagellar biosynthesis protein FlhB | - | - | 8 | 86 | 5.1E-52 |
| PANTHER | PTHR30531 | FLAGELLAR BIOSYNTHETIC PROTEIN FLHB | IPR006135 | Type III secretion system substrate exporter | 11 | 86 | 5.1E-14 |
| Pfam | PF01312 | FlhB HrpN YscU SpaS Family | IPR006135 | Type III secretion system substrate exporter | 11 | 80 | 3.7E-17 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 88 | 107 | - |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.