Pseudomonas viridiflava LMCA8, RT94_RS09820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00278
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003911 DNA ligase (NAD+) activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03119
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 319 392 2.8E-32
FunFam G3DSA:1.10.150.20:FF:000007 DNA ligase - - 444 519 5.2E-28
SMART SM00292 BRCT_7 IPR001357 BRCT domain 700 777 1.3E-6
SMART SM00532 ligaN3 IPR013840 NAD-dependent DNA ligase, N-terminal 3 462 0.0
Pfam PF14520 Helix-hairpin-helix domain - - 460 514 4.2E-4
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 494 513 650.0
FunFam G3DSA:1.10.150.20:FF:000006 DNA ligase - - 520 597 8.6E-22
FunFam G3DSA:3.30.470.30:FF:000001 DNA ligase - - 65 317 3.9E-107
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 526 545 900.0
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 607 691 8.26E-11
Gene3D G3DSA:3.40.50.10190 BRCT domain IPR036420 BRCT domain superfamily 680 776 5.8E-23
Pfam PF00533 BRCA1 C Terminus (BRCT) domain IPR001357 BRCT domain 700 772 2.2E-9
FunFam G3DSA:2.40.50.140:FF:000012 DNA ligase - - 319 392 2.3E-34
CDD cd17748 BRCT_DNA_ligase_like - - 703 772 1.00407E-22
FunFam G3DSA:1.10.287.610:FF:000002 DNA ligase - - 1 64 1.1E-27
PANTHER PTHR23389 CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 - - 17 759 1.8E-47
Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type 409 448 6.8E-11
Pfam PF03120 NAD-dependent DNA ligase OB-fold domain IPR004150 NAD-dependent DNA ligase, OB-fold 324 400 1.9E-34
SUPERFAMILY SSF52113 BRCT domain IPR036420 BRCT domain superfamily 701 772 3.74E-16
Pfam PF12826 Helix-hairpin-helix motif IPR041663 DisA/LigA, helix-hairpin-helix motif 524 587 7.9E-19
Pfam PF01653 NAD-dependent DNA ligase adenylation domain IPR013839 NAD-dependent DNA ligase, adenylation 4 319 3.6E-127
NCBIfam TIGR00575 JCVI: DNA ligase (NAD(+)) LigA IPR001679 NAD-dependent DNA ligase 11 600 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 321 402 5.82E-28
SUPERFAMILY SSF56091 DNA ligase/mRNA capping enzyme, catalytic domain - - 3 318 3.06E-117
Gene3D G3DSA:1.10.150.20 - - - 444 518 2.0E-26
CDD cd00114 LIGANc IPR013839 NAD-dependent DNA ligase, adenylation 6 319 0.0
Hamap MF_01588 DNA ligase [ligA]. IPR001679 NAD-dependent DNA ligase 2 774 51.023102
Gene3D G3DSA:6.20.10.30 - - - 393 443 5.3E-13
SUPERFAMILY SSF47781 RuvA domain 2-like IPR010994 RuvA domain 2-like 406 591 1.59E-48
Gene3D G3DSA:3.30.470.30 DNA ligase/mRNA capping enzyme - - 65 317 1.1E-98
Gene3D G3DSA:1.10.287.610 Helix hairpin bin - - 1 64 4.5E-27
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 1 616 0.0
PIRSF PIRSF001604 LigA IPR001679 NAD-dependent DNA ligase 606 778 1.2E-27
Gene3D G3DSA:1.10.150.20 - - - 617 671 2.2E-7
SMART SM00278 HhH1_4 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 460 479 1.8
Coils Coil Coil - - 1 21 -
Gene3D G3DSA:1.10.150.20 - - - 519 600 2.6E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.