Pseudomonas viridiflava LMCA8, RT94_RS07800

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_14, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GCGGCCAACCATGCGGCGAAGGTCCGCTCGTCCGGCAAGCTCGGTTACTACTGGCAGCTGTTCGCAGGCATGGGCTGGACCAGTATCCACTGGCTGCACA AGATTCATCAGCCGACGCTGGTGCTGGCGGGTGATGACGATCCATTGATCCCGTTGGTCAATATGCGCCTGTTGGCTTGGCGGATACCCAATGCCCAGCT ACACATAATCGATGACGGGCATTTGTTCCTGATCACTCGAGCCGAAGCCGTGGCTCCCATCATCATGAGTTTTCTGCAACAGGAACGACAACGCGCAGTC ATGCACCCGCAACCTGTACCTCCCAGAGCGCGCTGAATCCGTCCGTCACGGTCGAAGGCACTGGAACGCTTCGCGAACAAAAAAGCTTCACCGACTGCGC CAGAGACAGGAGTGTCGAACCGCGCAGAACGACGCAGGCCGCCGCGACGGGGCCTGCGCCAGTCCATGAGTTGATGGCTTGACGAAGGAGTGTTGCCCTC
DNA Sequence for Gene
>RT94_RS07800
ATGCAAGAAAAACCCACGAAGGTTGCCGAAATGACGCCGGCCACCTTCATCAACGTGCAAAGCGCCGTGACCGGCCTGCGCGGACGCGATCTGTTTTCCA CCCTGCGCAGTGTCGCCACCCAAGGCTTGCGCCATCCCTTTCGCAGCGCCCGCCACGCCCTGGCGCTGGGCGGTCAGTTGGGGCGCGTGATGCTGCTGGG CGAGACGCCGCATCCGCCCAACCCGCGCGACAGCCGTTTCGCCGACCCGACCTGGAGCCTCAACCCGCTGTACCGTCGTGGCTTGCAGGCTTATCTGAGC TGGCAGCACCAGGTCAAACGCTGGATCGATGACTGCGACCTGTCGAAGGATGACCGGGCAAGGGCGCACTTTCTGTTCAACCTGCTCAACGATGCCCTGT CGCCAACCAACACCCTGCTCAATCCGCTGGCGGTCAAGGAGCTGTTCAATTCCGGCGGCACCAGCCTGATCAAGGGTCTGAGCCACATGGCCGATGATCT GCTGCACAACAACGGCTTGCCCAGCCAGACCACCAAAGACGCGTTTGAAATCGGTCGGACTGTGGCGGCAACACCCGGCGCAGTGGTGTTTCGCAACGAG ATGCTTGAGCTGATCCAGTACAAGCCGATGAGCGAAAAACAGTTCAGCCGACCGATGCTGATTGTCCCGCCGCAGATCAACAAGTACTACATCTTCGACC TGAGCCCCACCAACAGCTTTGTGCAATACGCACTCAAGAATGGCCTGCAGACTTTCGTGATCAGTTGGCGCAACCCGGATGTGCGGCATCGGGAATGGGG CTTGTCCAGTTACGTGGAGGCCACCGAAGAAGCGATGAATGTGTGCCGGGCAATCACCGGTGCCCGTGAAGTGAACATGGTCGGAGCCTGCGCCGGTGGT CTGACCATCGCCGCGCTGCAAGGCCATTTGCAGGCAAAGCGCCAGATACGGCGAGTGGCAAGCGCGACCTACATGGTCAGCCTGCTGGACAGCCAGATCG AAAGCCCGGCCACGCTGTTCATTGACGAAGAAGCACTGGAAGCCGCCAAACGTCGCTCCTATCAGCGGGGTGTGCTGGAGGGCAGCGACATGAGCCGGGT ATTTGCCTGGATGCGGCCCAACGACCTGATCTGGAGCTACTGGGTCAACAACTACCTGCTGGGCAAGGCACCACCGCCGTTCGACATTCTCTACTGGAAC AACGACACCACACGTCTGCCGGCCGCGCTGCACGGCGACCTGCTGGATTTCTTCAAGCACAACCCGCTCAGCCATCCGGGCGGACTGGAGGTCTGCGGTA CGCCTATCGATCTGCAGAAAGTCACAGTGGACAGTTTCAGCGTCGCCGGCATCAACGACCACATCACCCCTTGGGATTCAGTCTATCGCTCGACCCTGCT ACTGGGCGGCGAGCGTCGTTTCCTGCTGTCCAACAGTGGTCACGTGCAGAGCATCCTCAACCCGCCGGGCAATCCGAAAGCCAATTACGTAGAGAACGGC AAGCTCAGCGGCGACCCGCGCGCCTGGTATTACGACGCCCAGAACCACGAAGGCAGCTGGTGGCCTGAATGGCTGACCTGGATTCAGGAGCGTTCCGGCA GTGAGCGCGAGACCCGCATGGAACTGGGCAACGCCAAGTACCCGCCGATGGAAGCTGCGCCGGGCACCTACGTGCACATGCGCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGGCCTGACCTGAAGGGGCCACCCTGTGCGGTGCGCCCCTTGCCTCCTGATGACTTTGGATTCTCAAACAAGAAGACTGGATGAAAACCCGCGACCGTAT CCTCGAATGCGCACTGACGCTGTTCAATCAACAGGGCGAACCCAACGTCTCGACACTGGAAATCGCCAACGAAATGGGCATCAGCCCTGGCAATCTGTAC TACCACTTTCACGGCAAGGAGCCGCTGATTCTGGGTCTGTTCGAACGCTTCCAGACCGAACTCGCCCCTCTGCTCGACCCGCCCGCCGACGCGAGGCTCA ATGCCGAAGACTACTGGATGTTCCTGCACCTGATCGTCGAGCGCCTGTCGCACTACCGATTTCTGTTTCAGGACCTGTCCAACCTCGCCGGACGCCTGCC CAAGCTGGCACGTGGCATCCGCAACCTGCTCAACTCGCTCAAACGCACCCTGGCTTCACTGCTGGCCCGCCTGAAATCCCAGGGCCAACTGGTCAGCGAA
Amino Acid Sequence
>poly(R)-hydroxyalkanoic acid synthase
MQEKPTKVAEMTPATFINVQSAVTGLRGRDLFSTLRSVATQGLRHPFRSARHALALGGQLGRVMLLGETPHPPNPRDSRFADPTWSLNPLYRRGLQAYLS WQHQVKRWIDDCDLSKDDRARAHFLFNLLNDALSPTNTLLNPLAVKELFNSGGTSLIKGLSHMADDLLHNNGLPSQTTKDAFEIGRTVAATPGAVVFRNE MLELIQYKPMSEKQFSRPMLIVPPQINKYYIFDLSPTNSFVQYALKNGLQTFVISWRNPDVRHREWGLSSYVEATEEAMNVCRAITGAREVNMVGACAGG LTIAALQGHLQAKRQIRRVASATYMVSLLDSQIESPATLFIDEEALEAAKRRSYQRGVLEGSDMSRVFAWMRPNDLIWSYWVNNYLLGKAPPPFDILYWN NDTTRLPAALHGDLLDFFKHNPLSHPGGLEVCGTPIDLQKVTVDSFSVAGINDHITPWDSVYRSTLLLGGERRFLLSNSGHVQSILNPPGNPKANYVENG KLSGDPRAWYYDAQNHEGSWWPEWLTWIQERSGSERETRMELGNAKYPPMEAAPGTYVHMR
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site