Pseudomonas viridiflava LMCA8, RT94_RS07155

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
TGCAGAAGTCGGGTGACAACTCTGCGTCGGTCAAGCTGACTCTCGAAGATGGCAGTGAATACCCGCAGGAAGGCAAGCTCGAGTTCTCCGAAGTGTCGGT CGATCAGGCCACCGGATCGGTGACCCTGCGCGCTGTGTTCCCCAACCCGGACCACATGCTTCTGCCTGGCATGTTCGTTCACGCTCAGCTGAAGGCTGGC GTCAACAGCAAGGCCATCCTGGCGCCGCAGCAAGGCGTGACCCGCGACCTGAAAGGTACGCCGACCGCTCTGGTGGTCAACAAGGACAACAAGGTCGAGC AGCGTGAACTGGTGACCAGCCGTACCACCGGTGCCTACTGGCTGATCGAGAAAGGGCTGAGCGAAGGTGACCGCGTGATCACCGAAGGCCTGCAATACGT CAAACCAGGCGCTGAAGTGAAGGTCAAGGAAGCAACCAACCTCACCGCTGACCAGTCTGCCAATGCTGCCCCTGCTGCCACTGGCAAAGGTGAGTGATAG
DNA Sequence for Gene
>RT94_RS07155
ATGTCCAGATTCTTTATTGACCGCCCCATCTTCGCCTGGGTATTAGCCCTGGTGATCATGTTGGTGGGTACGCTTTCGATCATGAAGCTGCCGATCAACC AATACCCGGCCATCGCGCCGACAGCCATCGATATCCAGGTCACCTACCCGGGTGCCTCCGCACAGACCGTGCAGGACACCGTGGTACAGATCATCGAGCA ACAGCTCAACGGTATCGATAACCTGCGTTACGTTTCCTCGGACAGTAACTCCGATGGCAGCATGACCATCACCGTGACGTTCAACCAGGGCACCAACCCT GACACCGCTCAGGTACAGGTACAGAACAAGCTCAACCTGGCCACCCCGCTGCTGCCGCAAGAAGTGCAGCAACAGGGTCTGCGCGTGACCAAGTCGGTGA AGAACTTCCTGCTGGTGATCGGCCTCGTGGCCGAAGATGGCAGCCTGACTCGCGAAGACTTGTCCAACTACATCGTTTCCAACATTCAGGACCCGATCTC GCGGACCTCCGGTGTGGGTGACTTCCAGGTGTTCGGTTCGCAGTACGCGATGCGCATCTGGCTGGATCCGGCCAAGCTGAACAACTTCCAGTTGACGCCT GTGGACGTGACCACCGCGGTCAGTGCACAGAACGTGCAGATCGCGACCGGTCAGCTGGGCGGCCTGCCAGCGCTTCCCGGCACTCAGCTGAACGCGACCA TTATCGGCAAGACCCGCCTGCAGACTGCCGAACAGTTCGGCAATATTTTTCTGAAGGTCAACGCTGACGGTTCGCAGGTTCGTCTCAAGGACGTCGCGCG TATCGAACTGGGCGGTCAGAACTACAGCATCGACGCACAGTTCAACGGCAAACCGGCTTCCGGTATGGCGATCAAACTGGCCTCGGGTGCCAACGCCCTC GACACAGCCAAAGCGATTCGCGCCACCATCAGCGAGCTGGAACCTTTCTTTCCGCCAGGCATGAAAGTCGTCTACCCGTATGACACCACCCCGACCGTAA CGGAATCCATCAGCGGCGTAGTTCACACCCTGATCGAAGCCATCGTGCTGGTGTTCCTGGTGATGTACCTGTTCCTGCAGAACCTGCGCGCGACCATCAT CACCACGATGACCGTGCCGGTGGTACTGCTGGGTACGTTCGGCATCCTTGCCGCGTTCGGCTTCACCATCAACACGCTGACCATGTTCGGCATGATTCTC GCTATCGGACTTCTGGTGGACGACGCCATCGTGGTGGTGGAAAACGTCGAACGGGTCATGGCCGAGGAGCATCTGTCTCCGAAGGAGGCCACGCAGAAAT CCATGGACCAGATACAGGGTGCGCTGGTCGGTATCGCCATGGTGCTCTCGGCGGTACTGCTGCCGATGGCGTTCTTCGGCGGCTCCACAGGCGTGATCTA CAAGCAGTTCTCGATCACCATTGTTTCGGCGATGGCGCTGTCGGTCCTCGTGGCCCTGATCTTCACCCCGGCGCTCTGCGCCACCATGCTCAAACCTATC GACCCGGAGAAACACGGCCAACCCAAGCGTGGCTTCTTCGGCTGGTTCAACCGGACCTTCGACCGCAGCGTAGTCAGCTACGAAAACGGCGTGAAACGCA TGGTGACCCACAAGTTGCCGGCCTTCGTCGTGTACCTGATCATCGTGGCGGGCATGATCTGGCTGTTCACCCGTATTCCGGCGGCGTTCCTGCCCGAAGA AGACCAGGGCGTCATCTTTGCCCAGGTACAGACACCGGCTGGTTCTTCCGCAGAGCGCACGCAGAAGGTCATCGATGACATGCGCGACTTCCTGCTCGAC AAGGAGAACGGTGAAGGCAAGGGCGTGAACTCGGTGTTCAGCGTCAACGGCTTCAACTTCGCCGGTCGTGGTCAAAGCTCCGGTCTGGCGTTCGTGATGC TCAAGCCGTGGGACGAGCGTGATGCCGAGACCACCGTGTTCAAGATTGCCGAACGGGCTCAGGCGCACTTCGCCAGCTTCCGTGACGCCATGGTCTTCGC AGTCGTGCCGCCATCGGTACTGGAACTGGGTAACGCCACCGGTTTCGACGTTTACCTGCAGGACCAGGGCGGTGTCGGTCACCAGAAACTGCTGGATGCA CGCAATCAGTTCCTGGGCATGGCCGCGCAGAGCAAGATTCTGGCAGGTGTACGTCCCAACGGCCTGAACGACGAACCGCAGTATCAACTGACTGTGGACG ACGAGAAGGCCAGCGCACTGGGCATTACCCTGTCCAACATCAACCAGACCCTGTCCATCGCGCTGGGCGGCAGTTACGTCAACGACTTCATCGACCGTGG TCGTGTGAAGAAGGTGTATGTGCAGGGCGAAGCTTTCAGCCGCATGACGCCTGAAGACCTGCAAAAGTGGTTCGTGCGTAACGACAGCGGCACCATGGTG CCCTTGTCGGCCATCGCCAGCGGCGAGTGGATCTACGGTTCGCCCAAGCTGTCGCGCTATAACGGCGTAGCGGCCATGGAAGTGCTGGGCACCCCTGCTC CGGGCTACAGCTCCGGTCAGGCCATGGCGGAAGTCGAAGCCATCGCTCAGAAACTGCCTGCCGGGATCGGCTACTCGTTTACCGGCCTGTCGTTCGAAGA ACGTCTGTCCGGCTCTCAGGCACCGGCCTTGTACGCACTGTCCATGCTGGTGGTGTTCCTCTGTCTGGCAGCGCTTTACGAGAGCTGGTCGATTCCGATT GCGGTCATGCTGGTGGTGCCGCTCGGCGTCATCGGTGCACTGATGGCGACCAGTCTGCGCGGGCTGTCCAACGACGTGTTCTTCCAGGTGGGCCTGCTGG TGACGGTGGGGCTGGCGGCGAAGAACGCCATTCTGATCGTCGAGTTCGCCAAGGAACTGCATGAGCAGGGCAAATCGCTGGTCGAGTCGGCGATGGAAGC TTGCCGGATGCGCTTGCGTCCGATCATCATGACCTCGATGGCGTTCATCCTCGGCGTGGTTCCGCTGGCAATCTCCAGCGGTGCCGGTTCGGGTAGCCAG CACGCCATCGGTACAGGCGTGATCGGCGGTATGATCACCGCAACGATCCTGGCGATCTTCTGGGTGCCTATGTTCTACGTCGCCGTGTCGTCGGTGTTCA AAGGCAAAGACAAATCAAACAAGCAACACGTCAAAACTACCGAGGCTGGCCAATGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
GCAAGTCCCTGATCTCTCTGGCAGTTACCGCGTTCATTCTCGGCGGCTGCTCCCTGATCCCCGAGTACAAGCAGCCGCAAGCTCCGGTCGCCGCTCAATA TCCGCAAGGTCCGGCGTACTCGCCGGCCGAAGCGGCCAAGATGGCTGCCGCCGAGCAAGGCTGGCGCGAGTTCTTCCGTGATCCGGCGCTGCAACGCCTT ATCCAGACCGCGCTGGTCAACAACCGTGACCTGCGTGTCGCGGCCCTGAACATCGACGCCTACCGTGCGCAGTACCGCATCCAGCGTGCGGACCTGCTGC CTGCGGTTTCCGCCAATGGCAGCGGCAGCCGTCAGCGCGTTCCGGGTGACCAGACGCAGACCGGCCAGTCGGCCATCACCAGCAGCTATTCAGCGACTCT GGGCGTCAGCGCCTATGAACTGGACCTGTTCGGTCGTGTCCGCAGCCTCAGCCAGCAAGCTTTGGAAACCTACTTCGCCAGCGAAGAGGCACGTCGCAGC
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MSRFFIDRPIFAWVLALVIMLVGTLSIMKLPINQYPAIAPTAIDIQVTYPGASAQTVQDTVVQIIEQQLNGIDNLRYVSSDSNSDGSMTITVTFNQGTNP DTAQVQVQNKLNLATPLLPQEVQQQGLRVTKSVKNFLLVIGLVAEDGSLTREDLSNYIVSNIQDPISRTSGVGDFQVFGSQYAMRIWLDPAKLNNFQLTP VDVTTAVSAQNVQIATGQLGGLPALPGTQLNATIIGKTRLQTAEQFGNIFLKVNADGSQVRLKDVARIELGGQNYSIDAQFNGKPASGMAIKLASGANAL DTAKAIRATISELEPFFPPGMKVVYPYDTTPTVTESISGVVHTLIEAIVLVFLVMYLFLQNLRATIITTMTVPVVLLGTFGILAAFGFTINTLTMFGMIL AIGLLVDDAIVVVENVERVMAEEHLSPKEATQKSMDQIQGALVGIAMVLSAVLLPMAFFGGSTGVIYKQFSITIVSAMALSVLVALIFTPALCATMLKPI DPEKHGQPKRGFFGWFNRTFDRSVVSYENGVKRMVTHKLPAFVVYLIIVAGMIWLFTRIPAAFLPEEDQGVIFAQVQTPAGSSAERTQKVIDDMRDFLLD KENGEGKGVNSVFSVNGFNFAGRGQSSGLAFVMLKPWDERDAETTVFKIAERAQAHFASFRDAMVFAVVPPSVLELGNATGFDVYLQDQGGVGHQKLLDA RNQFLGMAAQSKILAGVRPNGLNDEPQYQLTVDDEKASALGITLSNINQTLSIALGGSYVNDFIDRGRVKKVYVQGEAFSRMTPEDLQKWFVRNDSGTMV PLSAIASGEWIYGSPKLSRYNGVAAMEVLGTPAPGYSSGQAMAEVEAIAQKLPAGIGYSFTGLSFEERLSGSQAPALYALSMLVVFLCLAALYESWSIPI AVMLVVPLGVIGALMATSLRGLSNDVFFQVGLLVTVGLAAKNAILIVEFAKELHEQGKSLVESAMEACRMRLRPIIMTSMAFILGVVPLAISSGAGSGSQ HAIGTGVIGGMITATILAIFWVPMFYVAVSSVFKGKDKSNKQHVKTTEAGQ
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site