Pseudomonas viridiflava LMCA8, RT94_RS06820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02163
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00834
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:2.30.42.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 244 368 1.24E-23
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 110 122 1.1E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 205 222 1.1E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 313 325 1.1E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 227 244 1.1E-52
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 32 473 0.0
Pfam PF13180 PDZ domain IPR001478 PDZ domain 389 468 1.8E-8
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 6 282 2.33E-70
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 171 195 1.1E-52
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 389 472 1.2E-96
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 242 388 1.8E-10
Pfam PF13365 Trypsin-like peptidase domain - - 101 234 5.6E-35
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 131 151 1.1E-52
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 384 477 1.2E-17
Gene3D G3DSA:2.40.10.120 - - - 30 266 4.8E-85
SMART SM00228 pdz_new IPR001478 PDZ domain 273 355 5.1E-14
Pfam PF13180 PDZ domain IPR001478 PDZ domain 275 364 2.7E-17
SMART SM00228 pdz_new IPR001478 PDZ domain 387 466 2.8E-7
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 31 266 2.8E-99
CDD cd00987 PDZ_serine_protease - - 273 362 2.54505E-26
CDD cd00987 PDZ_serine_protease - - 388 473 1.76525E-15
MobiDBLite mobidb-lite consensus disorder prediction - - 78 97 -
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 388 476 3.81E-14
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 271 371 1.6E-28
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 271 372 3.6E-33

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.