Pseudomonas viridiflava LMCA8, RT94_RS06460

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_12, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
CATAGCCAGGGAGGCAACATGAGTAGTCAACACAAGCTGTTGCCTTCTTTGCTGGATCGATTGCTGGACGATCGACCGCATCAGTCCATGGAAGCGTCAT CGCAACGTCTTTGCTCGCTGGCCGATTACAAGGCCAGCATCGTCCGCGACCTGGAGATTCTGGTGAACACTCGCCAGTCTCTGGTTGCGGGCGAGCTGGA AGGTTTTGCCAATCTGGGCGGCACCATCCTGGACTATGGCATGCCCGACTTCACCAGCAGAAGCGTTCTCGACCCACAGGACCGTCTCTTGATTCAGCGC CAGCTGGAGAAAGCGATTACGGTCGGGGACCGGCGCTTTCGCAGTGTGAAAGTACAGTTGCTTGCACAACAGACCGGCCAACGCATGCTCACATTTCGCG TAGACGCAGTACTGCGCCTGCAGGACATTTCGCGCCAGGTTTCTTTTGACGCGGTGCTGCAGGTCAACACTCAGGAATACAAAGTGCAGAACCTCAACTG
DNA Sequence for Gene
>RT94_RS06460
ATGCTCGACGATCTGCTGCCCTATTACGAGAAGGAACTCTCGCACCTGCGCTTTCTGGGCCAGGAGTTCGCCACTCAGTATCCGAAGATTGCTTCGCGAC TGCTGATTGAAGGTGACAATTGCGAGGACCCGCACACCGAGCGACTGATCGAGGCGTTCTCGTTCCTGTCTGCGCGCGTGCACAAGAAACTCGATGACGA GTTTCCTGAAATCGTCGAATCGTTTCTTGAGGTGCTTTACCCCCATTACCTGCGCCCTACCCCATCGATGTCGATTGTCGAGTTCAATCTCGGCAAACAG GAAAAGGTGACTGAAGCCTATCGCGTCGCTCGACATACCGAGCTGCATGCGACTCCCATTGATGGCGTGGTGTGCAAATTCCGTACGTGCTACCCGGTCG AGTTGTGGCCGGTGGCAGTGCAAAGCGCGTCCTTCGTAGAGATGGAGCGCTCCGCGTTCAACGGCCACAGTGCTGATTTGATCGCGCGTCTGCGTATTGG CCTTGGTGCCACGTCAGACGTCATGTTTGGCAAGATGGAACTGAACAGCCTGCGCTTTTTCCTTGATGGCGAAAGCACGCTGATGCATCAGTTGTACGAA CTGCTGTTCAACAATCTGGCCAAGGCGACCTTGTCGTTCGAAGACGAAGGCAGGGTTCGCGAGGTCGTGCTGCCGGCAGGATCCCTGAAGTCAGTGGGCT ATGGGCTGGACGAAGGTCTGGTGGACTACTCGGAACGCTCGTTTCTGGGCTACCGCCTTCTGCATGAGTACTTCACGTTCCCCGACAAATTCATGTTCTT CGACCTGTCGGGTTTCGAACGCATTCTGGCGGGCAAGGAAATCGCCAAGGTGGAGGTCAACTTCTACTTTTCCGATTACGATTTGACCGACCGCCTCGTG CGCCTGACTCAAAACATCGGGCGCAACAATTTCAAGCTCAACTGCACGCCGATCATCAACCTGTTCCGCCAGCAGGCCGAGCCGATCAAGCTGACTCACA CCCAGCACGAATATGCGGTCACTCCGGATGTGCGGCTGCAGAGTTCGGCTGAAGTGGTGTCGATTGATCGTGTGCGCCGCGTGAAGAAGATCAACGGTGC CGATCAGGTCGGCACCTGCCATCCATTCTTCGAACCGCGTGGCGATCAGGGTCCGGGGCAGAGTTTCTGGATCGCACGTCGCCGCGCCGTACAGACGCGC CATAACGATGGCTCGAACATGTTCATTCGTGTCGTGGATCGCGATCTGGAACTGATCGACTCCAATAACGACACACTCAGCATTCGACTGACTTGCAGCA ATCGTGACCTGCCCCTGATGCTGCCGTTTGGCGGTGAGCGCGGGGATTTCAACATCCCGTCCAACTCAGTGGTCAAGGACATTCGCTGCTTGCGCAAACC GACAGCAACCGTGCGTGTTCCGCTGGGCAGCGGAGTGATCTGGCGTCTGATCTCCCACCTTTCGCTCAACCATATGTCGCTGGTTTCGAAAGGCCGTGAA GTGCTGCTCGAACTGTTGTCGCTCTACAACTACCGCAACGTTTCGGCGATCCGCAAGCAGATCAACGGGATTGTGTCGGTCAGCAGCGAACCGGTGGTCG CGCGTATCGGTCACCCGCGTCCGAACTTCGTGCGCGGCGTCGGCATCACCCTGAAGTTCGATGAGAGTCAGTACACCGGCAGCGGTGTATTTCTGTTTGG CATGGTGCTCGATCACTTCTTCGGTCAGTACTGCTCGATGAACAGCTTTACCCAATTAACCCTTCGCACCTTGCAGCGCGAAAAGAGAGTGGTCCAATGG CCCCCGCGAACAGGCGATCAACCCCTGGTCTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TCGACCAGGCAAGGGCTGAGCCGCACCGATTCGAATTTTTCCAGTTGGTGCGTTTGCTCCGCCTGCATTACAGCAGGAACGGGCGCATGGACCTGGAAAC CAGGCCGCATGAAGACCCGCTGCGCTTTCGTTCGCAGTTGTCGCTCAACTTCCCTGCCAGTGAAGTCAGTGACCTGCAGTTCGAACGCGAAGGCAAGGTT TCTGCAGCCGGGCTGCCGCTGTCCGAGGTGCAGGTCACGTTCATGGGGCTTGTCGGACCGTCGGGCGTATTGCCGCGCCCGTACACCGAGCTGTTGATCG ACCGTCACATTCAGTATCGGGACGATGCCGCGCATGCGTTCCTGGACATTTTTTCGCATCGCATGACCACGCTGTTTTACGAAGCCTGGCAGAAGTACAA GTTCTACATCGAATACGAGCGCAACGGCACGTCGAACTTTGATCGTTATCTGCTCAATCTGGTGGGATTAGGTCCCGAGGCGCAGAAGCAGAAATTTGAA
Amino Acid Sequence
>type VI secretion system protein ImpG
MLDDLLPYYEKELSHLRFLGQEFATQYPKIASRLLIEGDNCEDPHTERLIEAFSFLSARVHKKLDDEFPEIVESFLEVLYPHYLRPTPSMSIVEFNLGKQ EKVTEAYRVARHTELHATPIDGVVCKFRTCYPVELWPVAVQSASFVEMERSAFNGHSADLIARLRIGLGATSDVMFGKMELNSLRFFLDGESTLMHQLYE LLFNNLAKATLSFEDEGRVREVVLPAGSLKSVGYGLDEGLVDYSERSFLGYRLLHEYFTFPDKFMFFDLSGFERILAGKEIAKVEVNFYFSDYDLTDRLV RLTQNIGRNNFKLNCTPIINLFRQQAEPIKLTHTQHEYAVTPDVRLQSSAEVVSIDRVRRVKKINGADQVGTCHPFFEPRGDQGPGQSFWIARRRAVQTR HNDGSNMFIRVVDRDLELIDSNNDTLSIRLTCSNRDLPLMLPFGGERGDFNIPSNSVVKDIRCLRKPTATVRVPLGSGVIWRLISHLSLNHMSLVSKGRE VLLELLSLYNYRNVSAIRKQINGIVSVSSEPVVARIGHPRPNFVRGVGITLKFDESQYTGSGVFLFGMVLDHFFGQYCSMNSFTQLTLRTLQREKRVVQW PPRTGDQPLV
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site