Pseudomonas viridiflava LMCA8, RT94_RS06385
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF05591 | Type VI secretion system, VipA, VC_A0107 or Hcp2 | IPR008312 | Type VI secretion system sheath protein TssB1 | 6 | 158 | 1.4E-51 |
| NCBIfam | TIGR03358 | JCVI: type VI secretion system contractile sheath small subunit | IPR008312 | Type VI secretion system sheath protein TssB1 | 3 | 158 | 2.6E-49 |
| PIRSF | PIRSF028301 | UCP028301 | IPR008312 | Type VI secretion system sheath protein TssB1 | 1 | 165 | 9.5E-53 |
| PANTHER | PTHR35850 | CYTOPLASMIC PROTEIN-RELATED | IPR008312 | Type VI secretion system sheath protein TssB1 | 2 | 160 | 3.6E-50 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.