Pseudomonas viridiflava LMCA8, RT94_RS06040

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Sequence Data

Strain Pseudomonas viridiflava strain LMCA8 contig_11, whole genome shotgun sequence. [Details]
DNA Sequence Upstream of Gene
GTCAGATGAACTTCGTCGACAACCAGGTCAACCCGCGTACCGGCACCATCCGCGGCCGCGCCGTGTTCGACAATAGCGATGGCAGCTTCACCCCCGGTCT GTACGCACGTCTCAAGCTGGTCGGCAGCGGCACCTACTCCGCCGTGCTGATCAACGATGAAGCCGTCGGCACCGACCTGGGCAAGAAGTTCGTGCTGGTG ATGGACAAGGACAACAAGCCGGCCTATCGCCCGGTCGAGCTGGGTCCGAAAATCGAAGGCCTGCGCATCGTGCGCAACGGGCTGGGCAAGGACGACACCA TCGTCGTCAAAGGCTTGCAGCGTGTACGTCCCGGCCAGCCTGTGGACCCAGAAGTCACGCCGATGGCCAGTGCCGACACCCTCGCCCTGCTCCTCAAGCA ACGTCAGGCCCTTGAAGCCAGCAACCCGCAACAGTCGGCGCCCAATGCGACCGCCAAACTCGCCAGCGCCACTGCGCCTCGCGGCTAAGGGACTCGTTCG
DNA Sequence for Gene
>RT94_RS06040
ATGAACTTCTCAAAATTCTTTATCTCGCGGCCGATCTTCGCCGCCGTGCTGTCACTGCTGATCCTGATCGCCGGTGCCATCTCGCTGTTCCAGTTGCCGA TCAGTGAATACCCGGAAGTCGTGCCACCTACTGTCGTGGTAAGGGCCAACTTCCCGGGTGCCAACCCCAAGGTGATCGGCGAAACCGTGGCCTCGCCACT GGAGCAAGCCATCACCGGCGTCGAGAACATGCTGTACATGTCCTCGCAGGCCACTGCCGACGGCAAGCTGACCCTGACCATCACCTTCGCGCTGGGCACC GACCTGGACAACGCCCAGGTGCAGGTGCAGAACCGCGTGACGCGCACCGAGCCCAAGCTGCCTGAAGAGGTGACGCGGATCGGTATCACGGTGGACAAGG CCTCGCCCGACCTGACCATGGTCGTGCACTTGACCTCGCCGGATAAACGCTACGACATGCTGTACCTGTCCAACTACGCCGTCCTGAACATCAAGGATGA GCTGGCGCGACTGGGCGGCGTGGGCGACGTGCAGCTGTTCGGCATGGGCGATTACTCGCTGCGGGTCTGGCTCGATCCGAACAAGACCGCTTCGCGCAAC CTGACCGCAACCGACGTGGTCAACGCGATCCGCGAACAGAACCGTCAGGTTGCTGCCGGCCAGCTGGGCGCGCCGCCCTCACCCAATGCCACCAGTTTCC AGATGTCGATCAACACGCAGGGCCGTCTGGTCACCGAGGAAGAGTTCGAAAACGTAGTAATCCGCGCGGGTGCCGATGGCGAAATCACGCGCCTTAAAGA TGTGGCTCGTGTCGAACTGGGTTCCAACCAGTACGCCCTGCGCTCCTTGCTGAATAACCAGCCCGCCGTCGCATTGCCGATCTTCCAGCGTCCGGGCTCC AACGCAATCGACATCTCCAATGATGTGCGGGCCAAGATGGCCGAGCTGAAAAAAGGCTTCCCCGAGGGGATGGACTACAGCATCGTCTATGACCCGACCA TCTTCGTGCGCGGCTCCATCGAGGCGGTGATCCACACCCTGTTCGAAGCACTGATCCTGGTGGTGCTGGTGGTGATCCTGTTCCTGCAGACCTGGCGCGC CTCGATCATTCCGCTGGTCGCGGTGCCGGTCTCGCTGATCGGTACATTCGCCGTGATGCACCTGTTCGGCTTCTCGCTCAACGCGCTGTCATTGTTCGGA CTGGTACTGGCGATCGGTATCGTGGTGGACGATGCCATTGTGGTGGTGGAGAACGTCGAACGTAACATCGAGCTGGGGCTCGAACCGGTCGCAGCAACGC ATAAAGCCATGGCCGAAGTAACAGGGCCGATCATCGCCACGGCACTGGTGCTTTGTGCGGTGTTCGTACCTGCCGCGTTCATTTCCGGGCTGACCGGGCA GTTTTATAAACAGTTCGCGCTGACCATTGCCATCTCGACCGTGATCTCGGCGTTCAACTCGCTGACCCTGTCGCCTGCGCTGGCCGCGGTGCTGCTCAAG GCTCACGATGCGCCGAAGGACCGTTTCTCGCGCTTCCTCGACAGGATGCTGGGTGGCTGGCTGTTCCGTCCGTTCAACCGCTTCTTCGAGAAAGCCAGTC ATGGCTATGTCGGCACGGTTGCACGTGTGATTCGCAGCAGCGGCATCGCCCTGCTGGTGTACGCAGGCCTGATGGTGTTGACCTGGATGGGTTTCTCCAG CACACCCACCGGCTTCGTGCCCAGCCAGGACAAGCAGTACCTGGTCGCCTTCGCCCAGTTGCCGGATGCGGCCAGCCTGGACCGGACCGAAGAAGTCATC AAGCGCATGTCTGACCTGGCCCTGAAACAGCCGGGCGTGGAAAACGCGATTGCTTTCCCGGGCCTGTCGATCAACGGCTTCACCAACAGCCCGAACAACG GTGTGGTGTTCGTCGCACTCAAGCCTTTTGAAGAGCGTACAGACCCGAGCCAGTCGGCCAATGCCATCGCAGGCGCGTTGAACGGCCAGTTCGCTTCGAT TCAGGAAGCCTACATGGCGATCTTCCCGCCACCTCCGGTGCAGGGTCTGGGTACCATCGGCGGCTTCCGCCTGCAGATCGAAGACCGGGGCAATCTGGGC TACGACGAGCTGTACAAGGAAACCCAGAACATCATCGCCAAGAGCCGCAGCGTGCCTGAGCTGGCCGGTCTGTTCACCAGCTACACCGTGAACGTGCCGC AGGTCGATGCGTCCATCGACCGCGAAAAGGCCAAGACCCACGGCGTGGCGATCAGCGATATCTTCGACACCCTGCAGGTCTACCTGGGCTCGCTGTATGC CAACGACTTCAACCGCTTCGGTCGTACCTATCAGGTAAACGTTCAGGCTGAACAGCAGTTCCGTCAGGATGCCGACCAGATCGGTCAGCTCAAGGTGCGC AACAACCTGGGTGAAATGATCCCGCTGGCGACCTTCGTCAAGGTCACCGACACCGCAGGCCCCGACCGCGTGATGCACTACAACGGCTTCATCACGGCCG AGATCAACGGCGCTGCCGGACCGGGCTACAGCTCCGGCCAGGCCCAGGCGGCCGTCGAGAAACTGCTGAAGGAAGAGCTGCCCAATGGCATGGTCTACGA ATGGACCGACCTGACCTATCAGCAGATTCTGTCGGGCAATACCGCGCTGTTCGTCTTCCCGCTCTGCGTGCTGCTGGCGTTCCTGGTACTGGCCGCCCAA TACGAAAGCTGGAGCCTGCCGCTGGCGGTGATCCTGATCGTGCCAATGACGCTGCTGTCGGCAATTGCCGGGGTAATGATTGCCGGTAGCGACAACAACA TCTTCACCCAGATCGGCCTGATCGTACTGGTGGGACTTGCTTGCAAGAACGCGATCCTGATCGTCGAGTTCGCCAAGGACAAACAGGAAGAAGGCATGAG CCCGCTGGAGGCGGTGCTGGAAGCCTGCCGCCTGCGTCTGCGCCCGATCCTGATGACCTCGTTCGCCTTCATCATGGGTGTCGTACCGCTGGTGCTGTCC AGTGGCGCCGGTGCCGAAATGCGTCATGCCATGGGTGTGGCAGTGTTCTCCGGGATGCTCGGCGTCACCTTCTTCGGCCTGCTGCTGACCCCCGTGTTCT ACGTGCTGATCCGTAACTTCGTCGAGCGCCGGGAGGCCCGCAAGGCCGCACGGGCGCAGAAACTGCAAACACTGCCTGCGGAGATGCATTGA
BLASTN Search  |  DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
DNA Sequence Downstream of Gene
TGAGCGCGCTTAAACTCTTCGTTCCGAGCCTGCTGGTTCTGGCGCTGGCGGCCTGTGCCGTCGGCCCGGACTACAAGGCGCCTGAGACCGCACCGGCGAA ACTCGCCGCTGCCGCCCAGGGCAACTACGACCGTACCAAGGCCGATGCCTTGTGGTGGAAGCAGTTCGACGATCCGACCCTCGACAAACTGGTCACTCAG TCACTCAATGGCAACCGGGATCTTCGCGTCGCATTTGCCCGTTTGAAAGCGGCACGCGCCATTCGCGACGACGTGGCCAACGACGCCATGCCGGTGGTGA CCAGCCGGGCCAGCAGCGATCTGGGCAAGGGTCAGCAGCCTGGCGTGACTGACCGACGCGTTAACACCGAGCGTTATGATCTGGGTCTGGACATGGCCTG GGAGCTGGACCTGTTCGGACGTATTCAGCGCCAGCTGGAAGCCAGCGACGCCGACGAAGCGGCCGCACAGGCCAACCTCTATCAACTGCAAGTCACGCTG
Amino Acid Sequence
>multidrug efflux RND transporter permease subunit
MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIGETVASPLEQAITGVENMLYMSSQATADGKLTLTITFALGT DLDNAQVQVQNRVTRTEPKLPEEVTRIGITVDKASPDLTMVVHLTSPDKRYDMLYLSNYAVLNIKDELARLGGVGDVQLFGMGDYSLRVWLDPNKTASRN LTATDVVNAIREQNRQVAAGQLGAPPSPNATSFQMSINTQGRLVTEEEFENVVIRAGADGEITRLKDVARVELGSNQYALRSLLNNQPAVALPIFQRPGS NAIDISNDVRAKMAELKKGFPEGMDYSIVYDPTIFVRGSIEAVIHTLFEALILVVLVVILFLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFG LVLAIGIVVDDAIVVVENVERNIELGLEPVAATHKAMAEVTGPIIATALVLCAVFVPAAFISGLTGQFYKQFALTIAISTVISAFNSLTLSPALAAVLLK AHDAPKDRFSRFLDRMLGGWLFRPFNRFFEKASHGYVGTVARVIRSSGIALLVYAGLMVLTWMGFSSTPTGFVPSQDKQYLVAFAQLPDAASLDRTEEVI KRMSDLALKQPGVENAIAFPGLSINGFTNSPNNGVVFVALKPFEERTDPSQSANAIAGALNGQFASIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLG YDELYKETQNIIAKSRSVPELAGLFTSYTVNVPQVDASIDREKAKTHGVAISDIFDTLQVYLGSLYANDFNRFGRTYQVNVQAEQQFRQDADQIGQLKVR NNLGEMIPLATFVKVTDTAGPDRVMHYNGFITAEINGAAGPGYSSGQAQAAVEKLLKEELPNGMVYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ YESWSLPLAVILIVPMTLLSAIAGVMIAGSDNNIFTQIGLIVLVGLACKNAILIVEFAKDKQEEGMSPLEAVLEACRLRLRPILMTSFAFIMGVVPLVLS SGAGAEMRHAMGVAVFSGMLGVTFFGLLLTPVFYVLIRNFVERREARKAARAQKLQTLPAEMH
BLASTP | DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site