Pseudomonas viridiflava LMCA8, RT94_RS05250
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas viridiflava strain LMCA8 contig_11, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
TCTTGATCTACCGCTGGCCATGGGCGGTAACGCAGGCGTGGTGATCGAAGGCACGGTGAGCGCCTACGATCCTCACTATCAACTGCTGACCATCACCCTG CCCGACAGCAAACTCTCGATGCGAGTCGCGCACGCCGACATGCAACCGGGCACGCTGCTGCGCATCAAGGTGCAGGCGAGGGATGTCAGCCTCAGTCTGC AACCTGACGACCAGAGCAGCATTCTGAACCGCTTACCGGTGGTGGTGATGGAGGAAATGGTCGCCGACAACTCGGCCCACGTACTGGTCAGGCTGGACGC GGGCGGAACGCCCTTGCTGGCCCGCATCACCCGTTATTCCAGCGATCACCTCAAACTGCATCGCGGCCAATCGCTGTGGGCGCAGATCAAGGCAGTGGCG GTACTCGCGTAATGGCGACCGGCCGCAAACCAGACGCAAATAAACGGCACCACCGCAAAACGTCGCGGTCAGTGTTTTTAACTGCCTCTGGAATTCCGCC
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| DNA Sequence for Gene |
>RT94_RS05250
ATGCCTGACTCGACCATCATCAGCCCACTCGCCAGCGACCTGCATTACGTAGACGACAGCCAGCCGGGGTTCACGCGCAAGGTCCTGCGCGGCAAGTTCG CGTACTTCAATACCAAGGGCGAGCGCATCAAGGACGAGTCGGAGATCAAGCGTATCAACGCGCTGGCTGTGCCGCCCGCCTACACAGACGTCTGGATCTG CGCCGACCCCAACGGCCATCTGCAGGCGACGGGGCGTGATGCACGCGGTCGCAAACAGTACCGCTATCACCCGCGTTGGCGCGAGATACGCGATCAGGAC AAATATTCGCGCATGATCGAGTTCGGCCATGCCCTGCCCAAGGTACGCAAGCAGATCGAGGCACAGCTCGCCCAGCCTGGCATGGGTCGGGAGAAGGTCA TGGCGACAGTGGTTTCATTGCTCGACGCCACGCTGATCCGCATCGGCAACAGTCAATACGCCAAGGAAAACCGCTCCTACGGCCTGACTACATTGCGCAA CAAGCACGTCGAAGTGAAAGGCGGACAGATCATGTTCGAGTTTCGCGGCAAGAGCGGCGTCGAACACAGTGTCACAGTGAAGGACCGGCGCCTGGCCAAC GTGATCAAACGCTGTATGGAATTGCCCGGCCAGAACCTGTTTCAGTATCTGGACGATGACGGCGTGCGCCACACTGTCACTTCATCGGACATCAATGCTT ACCTGCAAAGCCTCACCGGCTCAGACTTCACCGCCAAGGATTATCGAACCTGGGCCGCAAGTGCGCTGGCTCTGGCGACTCTCCAGAAGCTGCATTGGGA GCCCGAAGCCGACGCGAAAAAGCACATCGTCGACATGGTCAAGGCCGTCTCGAAACAGCTGGGCAACACCCCCGCCATTTGCCGCAAATGCTACATCCAT CCGGCGGTGCTCGAGGGCTTCCTGCTCGGTAACCTGGCCAAACTCCCGCGCCTCAGGCAGCGCAAGGGATTACGCCTCGAAGAGGTCGCGCTGGCCAGTT ACTTGCGCACGCTGGCGGACCGCATCGAGGCTGAGGTTGAGAAGGTCAAAGCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTGCAGCCACTCAGCTCCGTCGGTCACTGCTCCGCTGCAACCGGCAGCCCCAAAGGCTCGCTCTGGGGCTGCCTGTCCACTGTGTCGTAAACGTGAGA CAGCTCTTCGATGGTCGTCACAAGGTGACGTACCGCATGCTGAACCTCCACAAAGATGTCATCCGACGCGATGCCTGCGCAGTTCATACGCTGAACGATG CTCTCCAGTTCGGCACCGCCCATGCGCCTGCCGATCAATACATACAGTACATCCACGCCTACATTGGCTACCGCAGCCAGATAATCGGCTTTCGGAACCC GTTCGCCGCTTTCATACCTTCCCTGTGCATTGGCAGCGACGCCTCCGAAGTGTCCCAGTTCACGCTGTGAAAGCCCCAGACGCTTGCGCTCCTGCTTCAA TCTTGTGCCTATATCGCTCATGTCCCTGCCGTCCATCCCCACTGTGAAAATCAATTCTCAAATCGAATCGTCCATGGATCGCCCGAGCCTGCCCGAGCGG
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| Amino Acid Sequence |
>DNA topoisomerase
MPDSTIISPLASDLHYVDDSQPGFTRKVLRGKFAYFNTKGERIKDESEIKRINALAVPPAYTDVWICADPNGHLQATGRDARGRKQYRYHPRWREIRDQD KYSRMIEFGHALPKVRKQIEAQLAQPGMGREKVMATVVSLLDATLIRIGNSQYAKENRSYGLTTLRNKHVEVKGGQIMFEFRGKSGVEHSVTVKDRRLAN VIKRCMELPGQNLFQYLDDDGVRHTVTSSDINAYLQSLTGSDFTAKDYRTWAASALALATLQKLHWEPEADAKKHIVDMVKAVSKQLGNTPAICRKCYIH PAVLEGFLLGNLAKLPRLRQRKGLRLEEVALASYLRTLADRIEAEVEKVKA
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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