Pseudomonas veronii R4, SU91_RS23240

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF50156
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004252 serine-type endopeptidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006508 proteolysis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02037
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 203 220 4.8E-52
Pfam PF13180 PDZ domain IPR001478 PDZ domain 273 362 6.3E-16
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 129 149 4.8E-52
FunFam G3DSA:2.30.42.10:FF:000037 Periplasmic serine endoprotease DegP-like - - 269 370 2.5E-33
FunFam G3DSA:2.40.10.120:FF:000007 Periplasmic serine endoprotease DegP-like - - 31 264 4.6E-98
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 384 477 7.3E-19
PANTHER PTHR22939 SERINE PROTEASE FAMILY S1C HTRA-RELATED - - 393 470 2.4E-98
NCBIfam TIGR02037 JCVI: Do family serine endopeptidase IPR011782 Peptidase S1C, Do 31 473 0.0
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 225 242 4.8E-52
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 169 193 4.8E-52
CDD cd00987 PDZ_serine_protease - - 388 473 1.48559E-17
CDD cd00987 PDZ_serine_protease - - 271 360 3.99527E-25
SUPERFAMILY SSF50494 Trypsin-like serine proteases IPR009003 Peptidase S1, PA clan 30 262 8.6E-71
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 388 475 3.29E-15
SMART SM00228 pdz_new IPR001478 PDZ domain 271 353 7.7E-16
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 108 120 4.8E-52
Gene3D G3DSA:2.40.10.120 - - - 30 264 3.1E-85
SMART SM00228 pdz_new IPR001478 PDZ domain 387 466 5.0E-11
Pfam PF13365 Trypsin-like peptidase domain - - 99 232 3.3E-35
SUPERFAMILY SSF50156 PDZ domain-like IPR036034 PDZ superfamily 229 354 2.63E-25
Pfam PF13180 PDZ domain IPR001478 PDZ domain 389 469 6.0E-10
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 240 387 1.1E-9
PRINTS PR00834 HtrA/DegQ protease family signature IPR001940 Peptidase S1C 311 323 4.8E-52
Pfam PF02163 Peptidase family M50 IPR008915 Peptidase M50 415 469 1.3E-6
Gene3D G3DSA:2.30.42.10 - IPR036034 PDZ superfamily 269 368 2.2E-27

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.