Pseudomonas veronii R4, SU91_RS20355
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii strain R4 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGGTGAAGAAGGCCGGAATGCCAGCACCGCCGGCGCGCATTTTTTCCGCCAGGGTGCCTTGGGGGGTGAGCACCACTTCGATTTCGCCGCTGAGCAGTTG CTTCTCGAACAGGGCGTTTTCGCCCACATAAGACGCGATCACTTTGCGGATCTGCTTTTGTTCCAGCAGCACGCCCAGGCCAAAGCCGTCGACGCCGCAG TTATTGGAAACCACGGTCAGGTCGCGGGTGCCTTTGCGCTTGATCTCGGCGATGAGGTTTTCCGGAATGCCGCACAGGCCAAAGCCGCCAGCGAGTACGG TCATGCCATCTTCCAGGCCTGCGAGGGCTTCTTCATAGGACGCCACGCGTTTATCGAAACCTGCCATATGCACCTCTTTTATTGTTAGTGGGCCAGCCAA TGCCTCGAGTGTTGCGCCGACGGATTGATTTGTTAAGTTGTTTTTTAAGGTTGATTGATTTAAAAAACTGCATAGTCGAGCCGTCGTCCGGAGTAATGTC
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| DNA Sequence for Gene |
>SU91_RS20355
ATGACCGTCAAACAGATGCGTGCCTTTTTGGCTGTGGCGCAGAGCCTGAGTTTTGCCGCCGCCTGCGAGCGCCTGCACCTCTCTCAGTCGGCGCTGAGCC TGACCATCAAAGGTCTGGAAGAAGGGCTGGGCGGGCGCTTGTTCAGCCGCAATACACGGAATGTCGCGCTGACCCCTGAAGGGGAATCCTTATTGCCGCT GGCGCGTCGGCTGATTGCCGATTGGGACAACGCCGAGGATGAACTGCGCCAGCGCTTCACCCTGCAGCGCGGGCGCGTAACGGTGGCGGCGATGCCGTCG TTTGCGGGCAACCTGCTGCCGCCGATCCTGAAGATATTCCGCGCGCGTTACCCCCATGTGAACGTGACGGTGCATGACCTGATCAACGAACAGGTGCTGG AAATGGTCCGTGATCGCCAGGTCGAGTTGGGCGTGGCGTTCGAACCGTCCGAGGGGTCGTCGCTGGCGTTTACGCCGTTATACCTGGACCGCTTCATTGC CGTGGTGCCCATGGATTCACCCTTGGCACTGCGCGCTGAAATCGACTGGAAAAGCCTGTTGGAGCAACCGTTCATTGCCCTGCAACGACCCTCGACGGTA CGGGTGATGCTGGAGGAGCATCTGGGTGCCTTGCAGATGAAATTGCCGGTGGCGCTGGAGAGTCATCAATTGGCGACGGTGGGCAAGATGGTTGCCAGTG GCCTGGGGGTCAGCGCCGTACCGGCATTATGTGCGCAGCAGATGCAGGAGGCGGGCGCCCATTGCATCACCTTGACCGATCCGGTGATCGAGCGGCCGAT TGGTGTGTTGACCAAACCGGGGCATGAACTGTCGGCGGCGGCACAGGTGTTGTTTGATATTTTCCGCGATGAAGCAGGGAAAGGGCGTTACCCCAACTTT TGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
AGTTGCATAAAAAATGTGGGAACTGGCAAGCCAGTTCCCACATTAGTTGAGAAGTACTTAGTAGTAGCGGTCGATTACTTTAACTTGCGAGTTGTCTTTG AAAGACTCCCACGCGTGGTTAAGTGTGTCGAACACTTGCTCGATGAAATTGCGATCGGCCGCCGCTTTCTTGCCGACATAACCCTGGCCGCGGCGGTACA TCTTCAGGCGCGCCGCCAGTTCACGGTTGTTTTTGTCGAACTCGGCTTCTTCGGTGTGGGGCGCCAGGCAGTCAATTTGGACTTTGCCCGATTTGCCAAT CCACAGGATATGGTCGTCGAGTGTGTCTTTCTGCGCTGCGAACATCTCAGCCAATTCTTCGATAGTTGGTTGGTTGTTCAGATTCATGTGTAAGCCCCTT GACCAGTTGGCGATCTATCAATTGATTCGTTAAAACTGCTTAGTTGTCTCCGGTTCCGAAAACCGGGCGTCAGTGACGGTCTGCCGAATACGGGCAGGGT
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| Amino Acid Sequence |
>LysR family transcriptional regulator
MTVKQMRAFLAVAQSLSFAAACERLHLSQSALSLTIKGLEEGLGGRLFSRNTRNVALTPEGESLLPLARRLIADWDNAEDELRQRFTLQRGRVTVAAMPS FAGNLLPPILKIFRARYPHVNVTVHDLINEQVLEMVRDRQVELGVAFEPSEGSSLAFTPLYLDRFIAVVPMDSPLALRAEIDWKSLLEQPFIALQRPSTV RVMLEEHLGALQMKLPVALESHQLATVGKMVASGLGVSAVPALCAQQMQEAGAHCITLTDPVIERPIGVLTKPGHELSAAAQVLFDIFRDEAGKGRYPNF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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