Pseudomonas veronii R4, SU91_RS19305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 779 | 808 | 9.9E-4 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 941 | 1330 | 1.5E-74 |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 805 | 940 | 5.2E-17 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1298 | 1317 | 1.0E-13 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 695 | 731 | 2.3E-7 |
| Pfam | PF20148 | Domain of unknown function (DUF6531) | IPR045351 | Domain of unknown function DUF6531 | 287 | 366 | 7.4E-20 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 642 | 669 | 1.0E-5 |
| CDD | cd14742 | PAAR_RHS | - | - | 103 | 220 | 8.99384E-30 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 880 | 912 | 9.4E-5 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 804 | 841 | 2.6E-4 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 880 | 909 | 2.0E-5 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 737 | 774 | 1.5E-5 |
| Pfam | PF05488 | PAAR motif | IPR008727 | PAAR motif | 164 | 209 | 1.3E-8 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1275 | 1295 | 1.0E-13 |
| PANTHER | PTHR32305 | - | - | - | 641 | 850 | 1.6E-35 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 594 | 625 | 4.8E-5 |
| NCBIfam | TIGR03696 | JCVI: RHS repeat-associated core domain | IPR022385 | Rhs repeat-associated core | 1251 | 1330 | 2.0E-25 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 780 | 815 | 1.5E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 737 | 777 | 7.5E-8 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | - | - | 1000 | 1025 | - |
| Gene3D | G3DSA:2.180.10.10 | - | - | - | 457 | 722 | 6.5E-39 |
| Pfam | PF03527 | RHS protein | IPR001826 | RHS protein | 1224 | 1260 | 1.1E-14 |
| Pfam | PF05593 | RHS Repeat | IPR031325 | RHS repeat | 657 | 688 | 2.7E-5 |
| PRINTS | PR00394 | RHS protein signature | IPR001826 | RHS protein | 1218 | 1238 | 1.0E-13 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1111 | 1133 | 0.004 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 568 | 608 | 6.9E-8 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 589 | 629 | 2.7E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 1114 | 1153 | 0.0013 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 641 | 672 | 2.9E-6 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 695 | 735 | 5.0E-7 |
| Gene3D | G3DSA:2.60.200.60 | - | - | - | 153 | 220 | 3.1E-14 |
| NCBIfam | TIGR01643 | JCVI: YD repeat (two copies) | IPR006530 | YD repeat | 653 | 693 | 2.2E-8 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.