Pseudomonas veronii R4, SU91_RS01560
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii strain R4 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACAGTGAGGCCGCGGCCTTCGCCACCCTTGAGCAGGGTGCCGACCCGCTCTTTCATTTCCCGCGCCGCCTTGTTGGTAAAGGTCATGGCGACGATGTACT GGGCGCGGATGCCGCAGTTCTGGATCAGGTGCGCGATCTTGCGGGTGATCACGCTGGTCTTGCCGGAGCCAGCACCGGCGAGCACCAATAGAGGGCCGCC GACGTAGTTCACGGCTTCTTGCTGCCGGGGATTGAGTCGGGACATACAGAGTTCAGGGAGTCGTTGTTCAAAAGGGCGGGCATTTTAACAGGCTGGTGAG ATTCTGCTGCCTTGGATCGACGGTGTGACGTACCACTCGATCTAAATTTGCCGCTTTTGCTACTTTGCCGCAGGATGTGGGGGTATTTGCGACTTTTGTG CGTACTGCTCGTATTTGATAACTTTTATCATTTGTGAATGCTCGACCTGACGTCATAATACTTGCCGCCAACGAAATCTTGCAGAGTCTAGGGAGCTAGC
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| DNA Sequence for Gene |
>SU91_RS01560
TTGTCCACGCCTGTCGAACCCTTGCGTTTGCTGCTACTGGCCGATACGCCTGAGTGGGCAGCATTGTTGCGCGAGTGCCTGGTGCCGATGGGCGACGGGG CTGTGCTGATCAGCGCGCCCAACTGGGACTCGGTGAGTCGTCTGTTCGATGACGACCACAGCGCCGTGCTGTTGACCACGCCCAACCTGCAACCCGGCCC GGGCCGTTGCAGCTTGCCGTGCGTGTTGTTGCTGGAACAGGAGCCGTTGGTGGCGCCCCTGGGAGTCAGTGACTGGCTGATCCGTCTTGCCATGGACGCC GACACCCTGCGCCGCTGCCTGCGCCATGTGCGCGAACGTGGCGTGCTGGAAAACACCTTGCAGCGCCTGGCCGAACAAGACCCGCTGACCGGTATCGCCA ACCGCCAGGGCTTCCAGACCCTGTTGGCCGCACGCCTGGCAGACAACGAAGGGCGCGGCCTGGCCCTGGGCCACCTGGACCTCGACAACTTCCGTCACGC CAACGATGCCCTCGGCCACCAGGCCGGCGACCGGCTGATCTTGCAAGTGGTTTCGCGGCTCAAGAGCCAGCTCGAAGCCGGCGACCAACTGGCGCGCCTG GGCAGCGATGAGTTTGCCTTGCTGATCGACACCCGCCGCGCGCCCCAGCGTGCCGAATGGATGGCCGAGCGCATCACCGAAGCCATGGCCGAACCGTATT GGGTGGATGGCGAGAGCCTGCTGATCGGTTGCAGCCTGGGCGTCGCGCATGCCCGCGCGCGTGCCGGCGCCGACCCGTTGATGTGGCATGCCCATATCGC CATGCAGCAAGCCAAAAGCACCCAGGGCTGCACCTTTCATATCTTCAACGAACGTATCAACCGCAACGCCCGCAGCCTGGCCGACCTGGAAAGCGAATTG CGCCGCGCGCTGCGTCGCGACGAACTGGAACTGCACTACCAGCCGCGCCTCGACCTGGACGACGGCCATATCGTCGGCCTCGAAGCCCTGGTGCGCTGGC GCCACGGCGAGCGCGGCCTGTTGCCGCCCAGCGAATTCGTGCCGCTGGCCGAACAGAGTGGGTTGATCGTACCGCTGGGTTACTGGGTGATCTCCCGGGC CCTGCGCGATATGCAAGACCTGCGCGAACGCGGCCTGCCGCCGCTGCATATGGCGGTCAACCTGTCGTTCCGCCAGTTCCAGGACAGCCAACTGCTCTCG ACCCTCAGCCGGCTGATTGTCGAGCGCGGGGTGGATGCGCAATGGCTGGAATTCGAGCTGACCGAAACCGCCGTGATGCGCCGCAGTGACCTGGTCAAGC AGACCATGGACGCCCTCGGTCGCCTCGGTGTGCGCTTTTCCCTCGACGACTTCGGCACCGGCTTCTCATCGTTCGTCCACCTCAACAGCCTGCCGATTGC CTTGTTGAAGATCGACAAGAGTTTCGTCGGCGGCATGGAAGAGCGTGAAGAAAACCGCAAGCTGGTCCACGCCATGATCAACCTGGCCCACAACCTCAAC CTGGAAGTGGTGGCCGAAGGCGTGGAAACCGCGGAACAACTGGCGCTGTTACGTTTGTTCGGTTGCGACCAGGCCCAGGGTTACCTGATCAGCAAACCGC TGCCATTGCCGGAGTTGGTGGACTACCTGACGTTCGGCAAGGACCAGCAGGCTTTGTTGGGCTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CTCATCCTTTTCTTGCCAACCCGCCCCCACATTTCAACCGCGCAAGACTTCTAGTCGGTCTGCGCGGCATGGAATGAGCGTTGAGCGTCTGGCTCCTGCC GAATCATGCGCTTCATCTTCGCCTCGAACGCACAGGTCAGGCTGATCGCCGCACAGGCCAGGCCCAGCGCCAGGCCCCACCACACGCCGGTCGGCCCCCA GCCCAGGGTGAAGGCCATCCACCAAGCCGCTGGCGCACCGATCAGCCAATAGCAACCCAGGCCCACCAGGAAGGTGGTCTTGGCGTCCTTGAGCCCACGG ATGCAGCCCATGGCGATGGTCTGCACGCCGTCGAACAGCTCGAACCAGGCCGCCACGGCCAGCAGGCTGACGGCGAGCACGATCACCTCGTGGAATGCCG GGTCGTTATGGTCGAGGAACAGCCCGACCAGCGGATCGGAATACAGCCACAGCACCGCGGCAAATCCCAACATCACCGCCGCGCCAAAGCCGATACCGAC
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| Amino Acid Sequence |
>diguanylate cyclase
MSTPVEPLRLLLLADTPEWAALLRECLVPMGDGAVLISAPNWDSVSRLFDDDHSAVLLTTPNLQPGPGRCSLPCVLLLEQEPLVAPLGVSDWLIRLAMDA DTLRRCLRHVRERGVLENTLQRLAEQDPLTGIANRQGFQTLLAARLADNEGRGLALGHLDLDNFRHANDALGHQAGDRLILQVVSRLKSQLEAGDQLARL GSDEFALLIDTRRAPQRAEWMAERITEAMAEPYWVDGESLLIGCSLGVAHARARAGADPLMWHAHIAMQQAKSTQGCTFHIFNERINRNARSLADLESEL RRALRRDELELHYQPRLDLDDGHIVGLEALVRWRHGERGLLPPSEFVPLAEQSGLIVPLGYWVISRALRDMQDLRERGLPPLHMAVNLSFRQFQDSQLLS TLSRLIVERGVDAQWLEFELTETAVMRRSDLVKQTMDALGRLGVRFSLDDFGTGFSSFVHLNSLPIALLKIDKSFVGGMEEREENRKLVHAMINLAHNLN LEVVAEGVETAEQLALLRLFGCDQAQGYLISKPLPLPELVDYLTFGKDQQALLG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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