Pseudomonas veronii R4, SU91_RS01215
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas veronii strain R4 scaffold00001, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACATCCATGGAAAGCGATCACTGTGACCCTCTACAGAATTCAAGAAGCGGACCTCGACATCCCTGATGCCTGGCAGGACCAGAGTATCAATATCTTCAAG CTGCCGGCCGTTGGCGGCGCCAAGGAAGCCAGTTTTGTCATCAGTCGTGATGCCTCCCAAGGCGACGCGATCTTCGCGGATTACATCGACAAGCAAGTGA AGAGCGCAGAGCAGCAATTGCCTGAGTTCAAGTTGGTCCAACGATGGGACACGGTGCTGCATGAACATGCCGCCACATTGCTGGATTACACCTGGAAGCG TGAAGGGCGCGAACTGATGTTGCGCCAGATGTTTATCGAACGAAAACCGGCCGTGCTGATCACCACATTGACGACCACGCCGAGTGATCTGGCTCATCAC GAGACTGCCTGGAAAATTGCCATGAGCAGCCTCAAACCCCTTGTGTCAGGCACCTGATTCATACACGGCAGCGGTTTAACCAATACGGCAGATAGACGCA
|
|
| DNA Sequence for Gene |
>SU91_RS01215
ATGGATGCGCAAGCAGCAGCACGCTTGGGTGATGAAATAGCCCACGGTTTTGGGGTCATGTCGATGATCGCCGGCGCTGTGGCGGGCGCATTGATTGGAG CTGCAGTCATCGCTGCCACCGTTGCCACAGGTGGAGTGGCGGTGGCGATCATGGCAGGCTCGGTCGCTGCGGGCGGTTTGTCGATGTTCCAAATCGTCAA AGGTCTAAATACGCTTTTCAACCTACCCGAACCTACCACGGGGAAGTTGTTGAAGGGCAGTTTCAATGTCTATATCAATGGCCTCAATGCGATGCGAGCG GGAGAGGACATCGCCTCGTCCTGTACCGGTTTTCCGATGAGTCACCCAATGTGGCCGTTTCCGGTATTGATCGCCGAAGGCAGTGCCACGGTCTTTATCA ACGGCAAGCCGGCGGCCCGCTTGCATAGCAAAATGGTCTGCGGTGCACATATCAAGAGTGGCAGCCCCAATACGTTTATCGGTGGGCCGACAGTTTCGGT TGCGTTTGTTCTTGATATCGAAGGTTGGATGCATTCCGGGCTGGAGCTTATGGGGCTGCTGGCAGCCGGCGCTGCACTGGTAATGGCCGCCATGGTGGGT CTTGCGGTACTTGTCGAGTTTGTCGTGATCGGCGGCCTGGTTTTAGGCGGCATGACCCTACTGGGTGAATTGGGTGACCGGCTTGGGCCGGGCTATCGAG ATCTGCTCCAAGGCGTGGCAGGTATGGCGATGCTAGGGCTGAGTCCGAAGATGGCAAGGTTGGCGACGCCTAAGTACAAACTTGGCGTGACTGAGGCTGA TATCCTGGCAATGCCGAAGGGAAGCCGACCAAATGCCGATACCTACCTCTCACCTAAGTACGTAAGCGAACATCTAGCCCAGTTCGATAAAGGCGCCTCG CGCTTCATGACAAAGTCCAACCTCGACAAGTACGGAATTGCTCAGCGTGATGGCACCTCCTTCATTATGCCCAAGCACGAGGCGGATCAATTGCTGGCCA ACGCCAAGGGTGACCCGAGAGCGTTGGAGCAGGCGCTTGGATTACCGAAAAACACGCTGGATAACAGCACTCTGGTTCGCATCGATATCCCCGCCCCGAA AGACTTGAATCTACGGATTCCCTCCGGGAACGAGGCCGGGGCGAATGAGTTATGGATTCCTGGCGGTAAACTGCCTACGGGCAGCAGTGAGGCAGTCATT GACGCAGGCAGTATTGCGCCCACTGACTTCAGTTGGACGCCATTAGGATTTTAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGGTGATCATGAAATTTCAGGATGTTTTTGTAAGTCGGGAGCACATGTTTTCCGTTGGAATCGAAAAGGAGTCGGGTCGTTTTTACGTATCCATACCGGT CAGCAACGGTATGGTCGATTACGAGGAATATTATGAAATTGATCGGGCAACTTTTGAACTGTTCAAGCGTGACCCGAACGCTGCTCTACCGTTCGTCATG CGTTGTCGCAAGCGCGAGTTGGACGAGCTGTTGCTGATTCAGCCGGGAACGAACCGAGGCACGGCGATCTGACGTTTCAACATCGTCTACCCACACACTT CTGATAGGATCTATGGAAAGGAGTGCTGACGCGCTCGGTAGGTTGTTGGGTGATGGCACCTACAATGCGGTAGCGGCGAAAGCCAACGTCGAAGATGGGC TGGGCCACAAGTACTATGAGGCGTGGCGAGTGCTGGACCCAAACAGTGCCGAAGCAAAAGCCATTGCCAATAAGAGCAAAGCCTATTACGACGCGATAAG
|
|
| Amino Acid Sequence |
>hypothetical protein
MDAQAAARLGDEIAHGFGVMSMIAGAVAGALIGAAVIAATVATGGVAVAIMAGSVAAGGLSMFQIVKGLNTLFNLPEPTTGKLLKGSFNVYINGLNAMRA GEDIASSCTGFPMSHPMWPFPVLIAEGSATVFINGKPAARLHSKMVCGAHIKSGSPNTFIGGPTVSVAFVLDIEGWMHSGLELMGLLAAGAALVMAAMVG LAVLVEFVVIGGLVLGGMTLLGELGDRLGPGYRDLLQGVAGMAMLGLSPKMARLATPKYKLGVTEADILAMPKGSRPNADTYLSPKYVSEHLAQFDKGAS RFMTKSNLDKYGIAQRDGTSFIMPKHEADQLLANAKGDPRALEQALGLPKNTLDNSTLVRIDIPAPKDLNLRIPSGNEAGANELWIPGGKLPTGSSEAVI DAGSIAPTDFSWTPLGF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|