Pseudomonas veronii R4, SU91_RS00975

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00563 EAL domain IPR001633 EAL domain 705 940 6.3E-75
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 286 396 2.62E-15
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 704 952 1.57E-91
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 408 515 7.33E-23
CDD cd00130 PAS IPR000014 PAS domain 412 514 3.88003E-7
CDD cd01949 GGDEF IPR000160 GGDEF domain 529 687 1.39662E-52
SMART SM00267 duf1_3 IPR000160 GGDEF domain 517 689 1.6E-53
Coils Coil Coil - - 213 251 -
SMART SM00086 pac_2 IPR001610 PAC motif 475 517 0.0019
SMART SM00052 duf2_2 IPR001633 EAL domain 699 945 1.4E-121
SMART SM00086 pac_2 IPR001610 PAC motif 352 395 4.2E-7
Pfam PF13426 PAS domain IPR000014 PAS domain 414 515 9.6E-11
Gene3D G3DSA:3.30.450.20 PAS domain - - 400 531 3.9E-27
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 699 956 3.0E-103
SMART SM00091 pas_2 IPR000014 PAS domain 278 345 24.0
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 304 401 1.1E-6
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 532 697 6.6E-50
Gene3D G3DSA:3.30.450.20 PAS domain - - 271 391 8.5E-32
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 264 952 0.0
Coils Coil Coil - - 693 713 -
CDD cd01948 EAL IPR001633 EAL domain 705 944 1.33173E-112
CDD cd00130 PAS IPR000014 PAS domain 290 392 5.92036E-6
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 700 955 7.5E-95
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 528 684 1.6E-42
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 527 686 4.7E-32
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 400 523 2.0E-14
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 533 691 4.79E-44
SMART SM00091 pas_2 IPR000014 PAS domain 403 469 1.6E-4
Pfam PF08447 PAS fold IPR013655 PAS fold-3 305 388 3.3E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.