Pseudomonas tuomuerensis JCM 14085, PT85_RS15350

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd01948 EAL IPR001633 EAL domain 707 945 4.65671E-113
PANTHER PTHR44757 DIGUANYLATE CYCLASE DGCP - - 381 957 0.0
SMART SM00086 pac_2 IPR001610 PAC motif 477 519 6.0E-4
Gene3D G3DSA:3.30.450.20 PAS domain - - 273 392 9.8E-31
CDD cd01949 GGDEF IPR000160 GGDEF domain 531 689 1.02053E-50
Pfam PF00563 EAL domain IPR001633 EAL domain 707 942 1.6E-75
FunFam G3DSA:3.20.20.450:FF:000001 Cyclic di-GMP phosphodiesterase yahA - - 702 957 6.1E-96
Pfam PF08447 PAS fold IPR013655 PAS fold-3 308 390 2.1E-18
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 416 527 1.01E-25
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 531 685 4.0E-41
SMART SM00267 duf1_3 IPR000160 GGDEF domain 519 691 3.5E-48
SMART SM00052 duf2_2 IPR001633 EAL domain 701 947 5.1E-125
CDD cd00130 PAS IPR000014 PAS domain 414 516 1.88205E-11
SMART SM00091 pas_2 IPR000014 PAS domain 405 472 3.9E-9
SMART SM00091 pas_2 IPR000014 PAS domain 280 347 37.0
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 533 699 1.0E-49
CDD cd00130 PAS IPR000014 PAS domain 292 394 3.20131E-5
SMART SM00086 pac_2 IPR001610 PAC motif 354 397 4.4E-7
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 306 403 1.0E-7
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 529 687 3.5E-32
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 287 399 1.29E-16
Pfam PF00989 PAS fold IPR013767 PAS fold 409 515 1.4E-15
Coils Coil Coil - - 215 263 -
Gene3D G3DSA:3.30.450.20 PAS domain - - 400 532 8.8E-33
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 535 693 3.77E-42
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 401 526 1.1E-21
SUPERFAMILY SSF141868 EAL domain-like IPR035919 EAL domain superfamily 706 954 1.96E-92
Gene3D G3DSA:3.20.20.450 EAL domain IPR035919 EAL domain superfamily 701 960 3.9E-104

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.