Pseudomonas tuomuerensis JCM 14085, PT85_RS12220
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
ACCTGCACCAACCAGGACCTGCCGCGCGAGCTGGCGCCGGGCGACATCTGCCTGCCCAGCGAAGGCACGCCGCAGTTTCTCACCTTCCGCAACATCGGCG CGGTGACGCCCTGCTACGCACCGCCACTGCAGGGCGACTACCTGTGGAAGCTGATTTCCAACCTGTCGCTCAACTACCTGTCGCTGGCCGACGTGCAGGC GCTGCGGGTGATCCTGGACACCTACGACCTGCCGCGCCATTACGACCAGCACGCCGCGCGGGTCAGCCAGCGCCGCCTGGAAGGACTCAAGCAGATCCGC CACCAGCACGTCGACCGCCTGCTGCGCGGCCTGCCGGTGCGCGGCGTGCGCACCGAGCTGACGCTCGATGCGGACGGCTTTCTCGGCGAGGGGGAGCTGT TCCTCTTCGCCTCCGTGCTCAACGAATTCTTTGCCCTGTACACCAGCCTCAACTCGTACCACGAGCTGCGCGTGCAGAGCACACAGGGAGAGGTGTATCA
|
|
| DNA Sequence for Gene |
>PT85_RS12220
ATGGACGCCGCGCATGGGTCAGCAGCCATTGCTGTGACCGCGCTCAGCCGTGGCATCCGCGAGTACAGCCTCTACCAGGCTGTGCGCCTGGTGCTGGAAC GGCTGCGTGAACAGCATCCGCAGCTGGACGAGGACGGTCTGTACCAGCGCCTTGAATTCCAGGCCAATCCCAGCCTGGGCTTTCCGGGCGCCGACATCGA ACAGGTGCAGTTCTTCGAGGAACACGGCGAGCTGCGCGCGCGCCTGCAGGTGAACCTGCCGGGGCTGTTCGGCAGCGGCTCGCCGCTGCCGGCCTTCTAC GCGGAACAGGCGCTGGGCGAGGACAACCCGACCCGCGACTTCCTCGACCTGTTCAACGAGCGCCTGTACCGGCTGCTGCTGCCGATCTGGGAGAAGTACC GCTACCACGCGCGCTTTCGCCCCGGCGCCACGGACCCCTTCTCCGCCCGGCTGTTCGCGCTGATCGGCCTGGGCGGCGAGCCGATCCGCGCCAGCGCCGC GCTGAACTGGAAACGCCTGCTGCCCTACCTGGGCCTGCTCAGCCTGCGCGCCCATTCGGCGGCGCTGATCGAGTCGGTACTGCGTTACTACTTCAAGCAT CCGGCGGTGCACATCGAGCAGTGTCTGGAGCGCCGGGTGAGCATTCTCGCCGAGCAGCAGAGCCGCCTGGGCCAGGCCAACAGCCGGCTGGGCAGCGACC TGGTGCTGGGCGACTCGGTGCGCGACCGCAGCGGCAAGTTCCGCATTCATGTGCGTCAGCTGTCCTGGGAACGCTTCCACGAATTCCTGCCCAACGGCCC GCACTACGCGCCGTTGCTGGCGCTGGTGCGCTTCACCCTGCGCGACCCGCTGGATTACGACATCCGCCTGGAACTGCAGACGGACCACCGTCCGGCACTC GGCCTGGGCGCTCACAACCCCTGCCGCCTGGGCTGGACCAGCTGGCTCGGCCAGCCCCGCTCCGCCGCTGAAGTGACCCTAAGCCCTTCTCAAGGATAG
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGAGATGATGACCGTCGACCTGCAACAACTCATCCGCGCGCTGGACGCCGACAGCCAGCGCGACCTGGAACAGGCCGCCGAACGCTGCGTGGCCCGCGCC GGCGGCAAGGTGCTGGTGGAGGACCTGCTGCTGGCCCTGCTGGAGCGCGGCGACAGCCTGCTGCTGCGCGCTCTGCAGGATGCCGGGGTGGAACCCGGCG AGCTGGCCGCCACCCTGCAACCGCGCGGCGAGCGCGAGGAAACCCGCAACCCGGTGTTCTGCGCCAGCCTGGTGCAATGGCTGCAGGACGCGCTGATGCT CGCCACCCTGGAGCTGGGCCGGCCGCACATCGACCAGGCGGCCCTGCTGCTGGCCCTGCTGCGCAACCCGCTGCGCCACGCCGGCACCCGTTACCAGCCG CTGCTGGCGCGCCTGAACGTCGAGCGCCTGCTGGAGTTCACCCGGGCCCAGGCCAGCAGCCCAAGCCACGCGGCCGATACGGCGTTGCAGCGTTTCACCC
|
|
| Amino Acid Sequence |
>type VI secretion protein
MDAAHGSAAIAVTALSRGIREYSLYQAVRLVLERLREQHPQLDEDGLYQRLEFQANPSLGFPGADIEQVQFFEEHGELRARLQVNLPGLFGSGSPLPAFY AEQALGEDNPTRDFLDLFNERLYRLLLPIWEKYRYHARFRPGATDPFSARLFALIGLGGEPIRASAALNWKRLLPYLGLLSLRAHSAALIESVLRYYFKH PAVHIEQCLERRVSILAEQQSRLGQANSRLGSDLVLGDSVRDRSGKFRIHVRQLSWERFHEFLPNGPHYAPLLALVRFTLRDPLDYDIRLELQTDHRPAL GLGAHNPCRLGWTSWLGQPRSAAEVTLSPSQG
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|