Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_4, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
GCATCAGGATCACATCGAGCTCGTTGAGCGCGATGTCCTGCTCGGCATCCAGTTCGTGCCAGCGTTGCGGGTCGTTGAACACGCGCAGTGGCCGCACCCG GGCGCGGGCCTGGCTGCCGCGCTGATACAGATCCTGCTGCTCCATGTAGAACAGCGTCCAGCCGCGCGACTGGGCAGCCAGCAACATGGCCAGGGAGCTG TCCTTCTTGAAGGTGATGGACGCGATGGGGTCCATGACGATCCCGAGACGAGTGCTCATTAGGGTTCCTCTGCAGCGTGACGGCCGGTCGCCAACGTGGT GACCGGCGCAAGGGCGTCAAGGGTGGCGCCGGAGTTGCCCTCGGTCAAGGTTGAATCCGCAGGGTGATCTGCTCTGTGGATTGCCGTCCGGGTCCTGTGC TACAAAGGCCGGCGGCAGGGTAGAAGCCCTGTCGTAGACCGGTCTCAGGCGCAGGCGAAGCGCAACGATAACGACTCACCGAGGCAATGGTAGGGCGATA
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DNA Sequence for Gene |
>PT85_RS11310
ATGGAACAGCATTCCGGCAGTTTGAAAGTGATGGTGATCGACGACTCGAAGACGATTCGCCGCACCGCGGAAACCCTGCTGAAGAAGGTCGGTTGCGAGG TCATCACCGCTGTGGACGGTTTTGATGCCCTGGCCAAGATTGCCGACACCCACCCGAACATCATCTTTGTCGACATCATGATGCCGCGTCTGGACGGCTA TCAGACCTGTGCGCTGATCAAGAACAACAGCGCCTTCAAATCCACGCCGGTGATCATGCTCTCGTCCAAGGACGGCCTGTTCGACAAGGCGAAGGGGCGG ATCGTCGGCTCGGATCAATACCTCACCAAACCGTTCAGCAAGGAAGAGTTGCTGGGTGCGATCAAGGCCCACGTGCCGGAGTTCGTGCCGAGTGAACAGG TATCCTGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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DNA Sequence Downstream of Gene |
GTCCTGCGACGGACCGTAGTTATTTCGTATGGGGAACACCATGGCTCGCATTCTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGAGATG CTCGAAAAGAATGGGCATCAGGTGCTCAAGGCCGAGAACGGCGCCGATGGCGTGGCCCTGGCCCGCCAGGAAAAGCCCGATGCCGTGCTGATGGACGTGG TCATGCCGGGACTCAATGGCTTCCAGGCCACCCGTCAACTGACCAAGGACGAGGAAACCAGTCACATTCCGGTGATCATCGTCACCACCAAGGATCAGGA AACCGATAAGGTCTGGGGCAAGCGCCAGGGTGCGCGCGACTACCTGACCAAGCCGGTGGACGAGGCAACCCTGCTCAAGACGCTGAACGCGGTGCTGGCC GGCTGACGCCGTCCGCACCGAACTCATCGACTCCCGGCACGGCAGGGCAGGCATGTCCGGACAACCGACTCCCTTCGATCTCCTTCTCGGCATCGATCAG
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Amino Acid Sequence |
>pilus assembly protein PilG
MEQHSGSLKVMVIDDSKTIRRTAETLLKKVGCEVITAVDGFDALAKIADTHPNIIFVDIMMPRLDGYQTCALIKNNSAFKSTPVIMLSSKDGLFDKAKGR IVGSDQYLTKPFSKEELLGAIKAHVPEFVPSEQVS
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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