Pseudomonas tuomuerensis JCM 14085, PT85_RS11055
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_4, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGTGCGCCGCAGCGAAGCGGAACTGCAGGCCTTCCTGGCCCAGGCGCCGGCCAACATCCTGGTCCGCTACCGCGACACCGGCAGTCTGGCCAGCCGCATC AAGGCCCAGTTGCGCGCCCTGCCGGCCGAGCAGTGGCCGAGCGGCGAGCAACTGGCGCGGCAGTACTGCCTGTCGCCCTCGACCCTGCGTCGCCGCCTCG CAGAGGCCGGCCTGCCGTACCAGGCGATCAAGGATCTGGTGCGCCAGGAGATGGCCACGCTGTGGCTGGCCGATGCGACGCTCACCTACACGCAGATCGC CGAGCGCCTGGGCTTTGCCGAGGCCAGCTCGTTCTACCGGGCGTTTCGCAAGTGGACCGGCACCAATCCGGGCCAGTACCGCGCACTGATCCTCGGCGCG CCGATTGGCGAAAACGGTCAGGCAGATTGAGACGAGCGACCATTGTCCGCGCCATTGGGGCTGCCGAAGATGACGCGGACCTGATTGCGAGGGCGGTGCC
|
|
| DNA Sequence for Gene |
>PT85_RS11055
ATGGACATCAAGGACAAGGTTTTCCTGATCACCGGGGGCGCTTCGGGCCTCGGCGCGGCGGCGGCCGAAGGGCTGCTGGCGGCCGGCGCCCGGGTGCTGC TGGCGGACATCAACGCCGAGGCGCTGGATGCGCGCGTGCGCGCCCTGGGCGCCCATGCGCGCGGCGTGGTCACCGATGTGTGCGACGCGGCGGCCGCCCA GGCCGCGGTGAACGCGGCGCGGGAGCATTTCGGCGCGTTGCACGGCCTGGTCAACTGCGCGGGGGTGGCCAGCGGCGAGCGCATCCTCGGTCGCCAGGGG CCGCATGGCCTGGACAGCTTCGCCCGGGTGATCGGCCTCAACCTGATCGGCAGCTTCAACATGCTGCGCCTGGCCGCCGAGGCGATCGCCGAGGGGGCGC CGGACGCGCAGGGCAATCGCGGGGTGATCATCAACACCGCATCGATCGCCGCCTTCGATGGTCAAATCGGGCAGGCGGCCTATGCGGCGTCCAAGGGCGG CATCGTCGCCCTGACGTTGCCCGCCGCGCGCGAACTGGCGCGTTACGGCATCCGCGTGATGACCATCGCCCCGGGCGTGTTCGAGACGCCGATGATGGCC GGCATGCCGCAGGAGGTGCGCGATGCGCTGGCCGCCGGCGTGCCCTTTCCCCCGCGCCTGGGCCGTCCGGCCGAATTTGCGGCCCTGGTGCGGCAGATCG TCGAGAACGACATGCTCAACGGCGAAGTGATCCGTCTGGACGGCGCCCTGCGCATGACCGCGAAATAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
AGAGAGGTGAACCCCATGCACAGCGATCCGGTAGTGATTCTTGGCAGCGCGCGCACGCCGATGGGCGGCTTCCAGGGCGACCTCGCCAGCCTCAGCGCCC CGCAACTGGGCGCCGCCGCCATTCGCGCGGCGGTCGAGCGCAGCGGCGTGGCGCCCGAGCGCGTGCAGCAGGTGCTGATGGGCTGCGTGCTGCCGGCCGG CCTGGGCCAGGCGCCGGCCCGCCAGGCGGCCCTAGGCGCCGGCCTGGACCTGGGCACCGCCTGCACCACGCTGAACAAGATGTGCGGCTCCGGCATGCAG GCGGCGATCTTCGCCCACGACGTGCTGCGCGCCCGCAGTGTCGACCTGGTGGTGGCCGGCGGCATGGAGAGCATGTCCAACGCGCCATACCTGCTGGAAA AGGCCCGCGGCGGTTACCGCATGGGCCACGGCAGACTGCTCGACCACATGTTCCTCGACGGCCTGGAGGATGCCTACGACAAGGGCCGCCTGATGGGCAC
|
|
| Amino Acid Sequence |
>3-hydroxy-2-methylbutyryl-CoA dehydrogenase
MDIKDKVFLITGGASGLGAAAAEGLLAAGARVLLADINAEALDARVRALGAHARGVVTDVCDAAAAQAAVNAAREHFGALHGLVNCAGVASGERILGRQG PHGLDSFARVIGLNLIGSFNMLRLAAEAIAEGAPDAQGNRGVIINTASIAAFDGQIGQAAYAASKGGIVALTLPAARELARYGIRVMTIAPGVFETPMMA GMPQEVRDALAAGVPFPPRLGRPAEFAALVRQIVENDMLNGEVIRLDGALRMTAK
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|