Pseudomonas tuomuerensis JCM 14085, PT85_RS04580
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CGACCTGCGTGCCCGCCGCCCGGCAGAACGCTTCCAGCGCACCGAGCTGGTAAAGCACCAGTGCGCGCACCTCTTCCGGCGAGCAGCTCAGCGAGCGGCG ACCGAAACCCTGCAGGTCGGGATAGGCCGGGTGGGCACCGATGCTCACGCCATGCCGCACCGCCAGCGCCACGCTGCGCTGCATGGTCAACGGATCACCC GCGTGATAGCCGCAGGCCAGGTTGGCCTGATCGATCAGCGGCATGGCCAGCGCATCGTTGCCCATGGTCCAGGCACCGAAGCTTTCACCCATGTCGCAAT TAAGCAGCAGCGTTGCCTTGTTCATGCCCGCAAGCTTCCGGGTTTGCCCCTGCTACCGCAAGCCCGGACGCCCCGCCGCAGCGCGAATCAGGCTTAGACA GTTTCGCAATTGAAAATACTTCTCAAGCTAATCGCAAATCATTATCATGCGCCGCGTCTGCCTTTACGAAACCTTTACCGCCCCACAAGGAGAGTTTCCG
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| DNA Sequence for Gene |
>PT85_RS04580
ATGCCGCTGCCCTTTGCCCGCACCGCGCTGGCCACCGCCCTGCTGAGCGCCAGCGCTGCTGTATTCGCCCAGGATCCGCTGGTCCTCGGCGATACCGTTG TCAGTGCTGCCGGTTATGAGCAAAAGATTACCGATGCGCCAGCCAGTATTTCCGTGGTCAGCGGCGAAGAGCTACAGAAGAAGCGTTACAGCAACCTCGC GCAAGCGCTGGAAGACGTGGAAGGTATCGACGTTCGTCAAGGCACCGGCAAGACCGGGGGCTTGAATATCAGCATCCGCGGTTTGCCCAGCGACTACACC CTGATCCTCATTGACGGCCGCCGCCAGAACACCGCCGGCAACGTCACCCCGAACGGTTTCAACGAAACATCCACCAGCTTCATGCCGCCGCTGTCGGCCA TCGAGCGCATCGAAGTCATCCGCGGTCCGATGTCGACCCTCTACGGCTCGGACGCCATGGGCGGCGTGGTCAACATCATCACCAAAAAGGTCGCCTCCGA ATGGGGCGGCTCGCTGAGCCTGGACCACACCTTCCAGGAAAACCGCGACTACGGCGAAGCCAGCAAGACCAGCCTGTACGCGAGCGGCCCGCTGGTCGAC GGTCTGCTGGGCCTGGCGGTGCGCGGCAGCCTGCAGGACCGTGGCGAATCCGACCTTACCTTCGACAATGACAGCAATGTCAGCAAGCGCGGCGCCGCTC CAGTGGAAGGCCGCAACAACACCCTGGGCGCTCGCCTGACCCTGACCCCCCACCAGAATCACGACTTCAGCCTGGATGTCGAGCGCGGCCGCCAGGTCTA CGACAATGACAACTGCCAGCTCGGCACGCTCGATGGCAAGACTGGCGGCAATGCCGTGTCTGGTTGCACCACCGACGCCCCCACGAAGGTCAACGGCTAT GCGGATGAGCTTCGCTTCGAGCGCGAGCAGTTCGCCTTGAGCCACACCGCGCGCCTGGGCTTCGGCACCCTGGACAGCAGCCTGACCCACAACACCACGG AAACGCTCGGCCGGACCATTCCCGGCACGCTCGGCGTGGCCTACACCGGCTACCCCTCCATCGTTGCGGGCGCCGATCGCGAACTGAAATCCACTGACCT CGTATTCGACACCAAGCTGGTCAGCCCCATCGGCGAGTCCCATATCGCCACCCTGGGCGCCCAATGGTGGGACGCCGAGGTCATCGACGGCATTGCGTCC GAGAAATTCGAACAGTCCACCTGGTCGCTGTTCGCAGAAGACGAATGGCGCCTCCGTGACGACCTGGCACTGACCCTCGGCGCCCGCTACGAAAACCACG ACGCCTTCGGTGGCCACGTGAGCCCCCGCGCCTATCTGGTGTGGAACACCAGCGACCACTGGACGCTGAAAGGCGGCGTCAGCCGTGGCTACAAGACGCC GACCCTCAACCAGCTGCATGACGGCATCAACGGCGTTACGGCCCAGGGCCAGACCATCACCATCGGCAGCCCGAACCTGGATCCGGAGATCACCACCAAT ACCGAGTTCGGGGTGTACTTCGACAACTATGCCGGCTTCAGCGCCAATGCCACGCTGTTCCATAACAAGTTCAAGGACAAGATCGACGACGGCACACCGC TGGCCAACTGTTTCTACACGGCCAACCCCAACCAGCCCGGCTGCGTGAGCTTTGGCAGTGGCTTCACCCAGGAAAGCTTCGCGCAAAGCATCAACATCGA CGAGGCCGTCACACAGGGCCTGGAACTGGCCAGCCGCTGGCAGTTCGCACCGCGCTGGAGCCTGAGCGGCAACTACACCTACAGCGACAGTGAACAGAAA AGCGGCATCAACAAGGGCGCTCCGCTGACCAACACGCCCGAACATATGCTCAACGCCAGCCTCAACTGGAACGCCAGCGAGCGGCTGACCCTGTGGATCA AGGGCGAATACCGTGGCGAGCGTGCCCGCTTCACCGACAAGTACGAAAACCTGACTGCCGCCAACCAAGCCCTTCAGGATGAAGTCGGGGACCTGAAGGC TTACGAGGTATTCCATCTTGGCGGTTCGTATAAGGCCTCCGAGAACGTGACCTTCAACGCGAGTATCTACAACCTGTTCGACAAGGACTTCCTCGACGGC GAAACCTATACCACCGACACGGGTGCGGTAGGCTGGGCGTCCTACTACACCCAGTCAGCTGCTGCCACCACCGGTACGCTGGAGGAAGGTCGGCGCCTCT GGCTCTCCGCCACGGTCGACTTCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GTCAGCACCCAAAGGCCCGCCCTTCCAAGGGCGGGCCTTTTTGCGAATGTATGTTATTGGTAAATCCCTAACATCTACGGCCCGAAGCGCCTTAGAATCC CGCCCCATTCCTACTGGCCTTGTGCCGCAACCTATTACCGGAACCAGTCTTCCATGCGTCTCTGGCTCGGCACCCTCCGCCAATGGCACTGGATCAGCTC GGCGCTCTGCCTGGCCGGCATGCTGCTGTTCGCCGTCACTGGCATCACCCTGAACCATGCCGGCCAGATCGAAGGCAAGGCGCAGGTCTCCAGTCGCATC GAGCAGTTGCCCAAATCCCTGCAGGAACTCCTGCTGGCGGACGCGCCGGTAGAAGGCGTGCCGACCGAGCTGGCCGAGTGGCTGGAAGACCGCCTCGGCA TCCGCCCGGACGGGCGCGAGGCCGAATGGTCTGAGGGCGAGCTGTACGTCGGCCTGCCGCGCCCCGGCGGCGATGCCTGGTTGAGCCTGGACCTGGTCGC
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| Amino Acid Sequence |
>TonB-dependent receptor
MPLPFARTALATALLSASAAVFAQDPLVLGDTVVSAAGYEQKITDAPASISVVSGEELQKKRYSNLAQALEDVEGIDVRQGTGKTGGLNISIRGLPSDYT LILIDGRRQNTAGNVTPNGFNETSTSFMPPLSAIERIEVIRGPMSTLYGSDAMGGVVNIITKKVASEWGGSLSLDHTFQENRDYGEASKTSLYASGPLVD GLLGLAVRGSLQDRGESDLTFDNDSNVSKRGAAPVEGRNNTLGARLTLTPHQNHDFSLDVERGRQVYDNDNCQLGTLDGKTGGNAVSGCTTDAPTKVNGY ADELRFEREQFALSHTARLGFGTLDSSLTHNTTETLGRTIPGTLGVAYTGYPSIVAGADRELKSTDLVFDTKLVSPIGESHIATLGAQWWDAEVIDGIAS EKFEQSTWSLFAEDEWRLRDDLALTLGARYENHDAFGGHVSPRAYLVWNTSDHWTLKGGVSRGYKTPTLNQLHDGINGVTAQGQTITIGSPNLDPEITTN TEFGVYFDNYAGFSANATLFHNKFKDKIDDGTPLANCFYTANPNQPGCVSFGSGFTQESFAQSINIDEAVTQGLELASRWQFAPRWSLSGNYTYSDSEQK SGINKGAPLTNTPEHMLNASLNWNASERLTLWIKGEYRGERARFTDKYENLTAANQALQDEVGDLKAYEVFHLGGSYKASENVTFNASIYNLFDKDFLDG ETYTTDTGAVGWASYYTQSAAATTGTLEEGRRLWLSATVDF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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