Pseudomonas tuomuerensis JCM 14085, PT85_RS03870
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_2, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GGCGCCCTGGCTGACGCCATCAACGCCGCCTTCGGCTCCTTCGACAAGTTCAAGGAAGAGTTCACCAAGGTCGCCATCGGCACCTTCGGCTCCGGCTGGG CCTGGCTGGTGAAGAAGGCCGACGGCTCCCTGGCTCTGGCCAGCACCATCGGCGCCGGCAACCCGATGACCAGCGGCGACACCCCACTGCTGACCTGCGA CGTCTGGGAACACGCCTACTACATCGACTACCGCAACCTGCGTCCGAAGTACGTCGAGTCCTTCTGGAACCTGGTGAACTGGGACTTCGTGGCCGCCAAC TACGCTGCCTGACGTTCCCCCTGCGGCGGCCTCGGCCGCCGCAGGTCCCCGCTGCACCCCTCGCGATTCGCCGACTTCCGCACCGTACCGGTTTTTCTGA CGCATTAAAGTCTGCGCCCCGCCTTCCGACACAGAAGGAATCGACAGCGAGCAGGCCGCCTGCCCTGTTCCTTCATGCCGTTGTTCAGGAACCACCGCCT
|
|
| DNA Sequence for Gene |
>PT85_RS03870
TTGACGCAGGTACGCCACCGTCGCCTGTCCCGCAAGTTGCTCCAGGTCGCGCTGCTGTCCGCCCTGGCGGTTGGCCTGTTGCTGAGCTCCGCGCAAATCC TCTACACCCTGCACCAGGTGCGCGCGACCCTGGACAGTGATGCCAAGCGCATCCTCAGCATGTTCCGCGACCCCTCTGCGCAGGCGGCCCTGACCCTGGA TCGCGCCATGGCCGAACAGGTCATCGAAGGGCTGTTCCAGCACGAGTCGGTGCGCCGTGCCTTCATCGGTCATGCGGACGAGCCGCCGCTGGCCGAGCGC AGTCGCCCGCCACTGGAGCTGCCCGGGCGCACCGTGACCGATGCACTGTTCGGCCGCGAACACTCACTGAGCGTGGCACTCCGGGGACAACTGCCTGATG AAGCGCCCGTGGGCGAGCTGCGCCTGTGCCTGGATACCGCGCTCTATGGCCAGGCCTTCCTCAAGGACGCGTTGTTCCTGCTGCTCAGCGGCCTCCTGCG CGCCCTGGGCCTGGCGCTGCTGCTGCACCTGATCTACCAGTGGCTGCTGACCCGCCCGCTGGAGCGCCTGCTCGACCATCTGGGACGCATCAACCCGGAA CGCCCCGGCGAACACCAGTTGCCGCTGCCCAAGGGCCACGAACACAACGAGCTGGGGCAGTGGGTGCATACCGCCAACCGCCTGCTCGGCGCCATCGAGC ACCACAGCCAGCTGCGCCAGCAGGCCGAGCACAACCTGCTGCGCGCCGCCGAGCACGATGCGCTCACCGACCTGCCCAACCGCCTGCAGTTGCAGACACG CCTGCAACGCATCCTCGCCGAGGCCGGCCAGCGGCAGCAGCAGGTGGCCGTGCTGTGCCTGGGCCTGGACGATTTTCGCGAGATCAACGAGCAGTTCGGC TACCCCTGCGGCGACCAGCTGCTGGCCGCCGTCGGCGAACGCCTGCGCCGCTACGCCGGACAGGTGCAGTGCCTGGCCCGCCTGGGTGGCGACCAGTTCG CCCTGATCCAGAACGACCCACAGCAGCCCTACCAGGCCGCTGAGCTGGCGCAGAGCATCCTCGACAGCCTGGACGAGCCGTTCGAGCTGGATGGCCAGCC GGTACACCTGCGCGCCACCCTCGGCATCACCCTCTATCCCGAGGACGGCGCCGACTCCGGTGACCTGCTGCAGAAGGCCGAGCTGACCATGACACTGGCC AAGCGCCGCGCCCGCAACCGCTACCAGTTCTATATCGCCAGCGTCGACCGCGAGATGCGCCGCCGCCGCGAGCTGGACAAGGACCTGCTGCAGGCCCTGG CCTGCGATCAGCTGCACCTGGTCTACCAACCGCAGATCGACTACCGCACCCAGCACATCTGCGGCGTCGAGGTGCTGCTGCGTTGGCAACACCCGCTGCA CGGTCCCATCGCCCCGGACCATTTCATTCCGCTGGCCGAGCAGAACGGCAGCATCCTGCCGATCGGCGCCTGGGTGCTCGACCAGGCGTGCCGGCAACTG CGCCTGTGGCACGACCAGGGCCTCACGCACCTGCGCATGGCGGTCAACCTGTCCGCCGTACAGCTGCATCACGGCCAGTTGCCCGGCCTGGTCGCCGAGC TGCTGCAGCGCCACCGGCTGCCGTCCGGCAGCCTGGAGCTGGAAATCACCGAGACCTGCCTGATGGAAGACGTGCACGCCGCCGCCGAGCACCTGCTCAG GCTGCGTCAGGCCGGCGCGCTGATCGCCATAGACGACTTCGGCACCGGCTATTCCTCGCTGAGCTATCTCAAGAGCCTGCCGCTGGACAAGATCAAGATC GACAAGAGCTTCGTGCGCGACCTGAAGACCGAGCCGACCCTGGAGGGAGATGCCGCCATCGTGCGCGCCATCATCCAGCTGGCCCGTAATCTCGCCCTGC AGGTCATCGCCGAAGGGGTGGAGACCAGCGAACAGGAACGCTACCTGATCAGCCAAGGCTGCGACGAAGGCCAGGGCTACCTGTACAGCAAGCCGTTGCC GGCGCGTGAGCTGGCTCCGCTGCTGCATGGCAACCTGCCCCGCGAAAGGCGCAGCAGCCCCCGCGAATGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GGGCGAGTCTCAATTAGCCCTTGTGCAAGGATGCAAATCTTTCGCATTATTGCCGGGTTAACGAGGAAACCCTCCCCCACACCCGCAAAGGATTCAGCCA TGCCCCGTTTGCCCCTGGCCTCGGCCAGCCTGCTCGCCCTCGCCATTTCCCTGGCCGGCTGTGGCGACGACAAGAACGCCACGCCTGCCAGCCAGTCCGC CGCGCCTGCCAGCCAGCAGAACGCCCCGGCGGCGGCCGCCTTCGATCAGGCCGAGGCGCAAGCCGTGGTCAAGCACTATGCCGACCTGGCCGCCGCCATC TTCGGCGACGCACTGAACACCGCCAAGGACCTGCAGGCCGCCGTTGACGCCTTCCTCGCCGCCCCCGGCGAAGCCACCCTGGAGGCCGCCAAGCAGGCCT GGCTGGCCGCCCGCGTGCCTTACATGCAGACCGAGGTGTTCCGCTTCGGCAACCCCAACGTCGATGAGTGGGAAGGCCAACTCAACGCCTGGCCGCTCGA
|
|
| Amino Acid Sequence |
>diguanylate cyclase
MTQVRHRRLSRKLLQVALLSALAVGLLLSSAQILYTLHQVRATLDSDAKRILSMFRDPSAQAALTLDRAMAEQVIEGLFQHESVRRAFIGHADEPPLAER SRPPLELPGRTVTDALFGREHSLSVALRGQLPDEAPVGELRLCLDTALYGQAFLKDALFLLLSGLLRALGLALLLHLIYQWLLTRPLERLLDHLGRINPE RPGEHQLPLPKGHEHNELGQWVHTANRLLGAIEHHSQLRQQAEHNLLRAAEHDALTDLPNRLQLQTRLQRILAEAGQRQQQVAVLCLGLDDFREINEQFG YPCGDQLLAAVGERLRRYAGQVQCLARLGGDQFALIQNDPQQPYQAAELAQSILDSLDEPFELDGQPVHLRATLGITLYPEDGADSGDLLQKAELTMTLA KRRARNRYQFYIASVDREMRRRRELDKDLLQALACDQLHLVYQPQIDYRTQHICGVEVLLRWQHPLHGPIAPDHFIPLAEQNGSILPIGAWVLDQACRQL RLWHDQGLTHLRMAVNLSAVQLHHGQLPGLVAELLQRHRLPSGSLELEITETCLMEDVHAAAEHLLRLRQAGALIAIDDFGTGYSSLSYLKSLPLDKIKI DKSFVRDLKTEPTLEGDAAIVRAIIQLARNLALQVIAEGVETSEQERYLISQGCDEGQGYLYSKPLPARELAPLLHGNLPRERRSSPRE
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|