Pseudomonas tuomuerensis JCM 14085, PT85_RS03305
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Cellular Component | GO:0043190 | ATP-binding cassette (ABC) transporter complex |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
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ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002741
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| CDD | cd08497 | PBP2_NikA_DppA_OppA_like_14 | - | - | 38 | 587 | 0.0 |
| Pfam | PF00496 | Bacterial extracellular solute-binding proteins, family 5 Middle | IPR000914 | Solute-binding protein family 5 domain | 113 | 517 | 3.3E-68 |
| SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 47 | 603 | 1.57E-115 |
| PIRSF | PIRSF002741 | MppA | IPR030678 | Peptide/nickel binding protein, MppA-type | 18 | 605 | 2.2E-93 |
| Gene3D | G3DSA:3.40.190.10 | - | - | - | 25 | 600 | 0.0 |
| Gene3D | G3DSA:3.10.105.10 | - | - | - | 322 | 580 | 0.0 |
| PANTHER | PTHR30290 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER | IPR039424 | Solute-binding protein family 5 | 5 | 600 | 2.3E-70 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.