Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_1, whole genome shotgun sequence. [Details] | |
DNA Sequence Upstream of Gene |
CAGGTCGTCGATCCGCAGTCCGGTACCGTCACCTACCAGCCCTGGAGTGCCGAGGACCTGGCGCGCTTCACCCGCCTGGTGCAGGACGCGGTGGGCTTCG ATGCCAGCCGTGGCGACAGCGTCAGCGTGGTCAACACGCCCTTCGTCGCCGACCGTGGCGAAGTGTTCGAGGAGATCCCGTTCTACGCGCAGCCCTGGTT CTGGGACATCGCCAAACAGATCATCGGCGCGCTGTTCATCCTCGCGTTGGTGTTCGGCGTGCTGCGTCCGCTGCTCAACAACATCACCGGCAACAAGAAG GGCGAAGGCAAGGATCTGGTGCCGTTCGAGCGCGACCTGCAGCCGTTGTCCTCCGAGCTGGATGAAGACCAACTGAGCCTGAGCGGTTCGGCCCAGCAGA TCATGCTGGCCAACCCCAATGACGGATTCGAAGCCCAGCTGAACGCCATCAAGAACCTGGTGGCGGAAAACCCGGCCCGCGTTGCCGAAGTCGTCAAAGA
|
|
DNA Sequence for Gene |
>PT85_RS00775
ATGGATCAACGGGGACGAGTGACCGTGAGCAAACTGAGCAAAGTCGACAAGGCCGGCATCCTGCTGCTCTCCCTGGGCGAGACCGACGCCGCGCAGGTAC TGCGTCATCTGGGCCCCAAGGAAGTGCAGAAGGTCGGTGTGGCCATGGCCCACCTGGGCAACGTGCACCGCGAGCAGGTCGAGGAAGTCCTCAGCGAATT CATCGTCATGGTCGGCGAGCAGACCGGCCTGGGCGTGGGTACCGACGGCTACATCCGCAAGATGCTCACCCAGGCCCTGGGCGAGGACAAGGCGGGCAGC CTGATCGACCGCATCCTGCTGGGCGGCAGCACCAGCGGCCTGGACAGCCTGAAGTGGATGGAGCCGCGCGCCGTGGCCGACGTGATCCGCTACGAACACC CGCAGATCCAGGCCATCGTGGTGGCCTACCTGGACGCCGACCAGGCCAGCGAGGTGCTCAGCCACTTCCCGCACAAGGCGCGCCTGGACATCCTGCTGCG CGTGTCCTCGCTGAACACCGTGCAACCGGCGGCGCTCAAGGAGCTCAACACCATCCTCGAGAAGCAGTTCTCCGGCAACACCAACACCAGTCGCGCCACC CTGGGCGGCGTGAAGCGTGCCGCCGACATCATGAACTACCTGGACAGCACCATCGAAGGCCCGCTGATGGATGCCATCCGCGAGCTGGACGAGGAGCTGG CGCTGGAGATCGAAGACCTGATGTTCGTCTTCGAGAACCTGGCCGACATCGACGACCGTGGCATCCAGGCGCTGCTGCGCGAGATCTCCTCCGACGTGCT CACCCTGGCCCTCAAGGGCGCCGACGAGAACGTCAAGGAGAAGATCTTCAAGAACATGTCCAAGCGCGCTGGCGAGCTGCTGCGCGACGACTTGGAAAGC CTCGGCCCGGTGCGCGTCAGCGATGTCGAGACGGCGCAGAAGGAAATCCTCGGCATCGCGCGTCGCATGGCCGAAGCCGGCGAAATCGTCATCGGCCCGA AGGGCGCCGAAGAAATGATCTGA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
DNA Sequence Downstream of Gene |
TCCCGCTTGCCGGGATAGCCAGACCCCTGGCGGGGCGAGAGTCGAGTCACCATGCAGAATGGCCAAGGCGAATACGAAAGCGATCTGATCCGCGCCAGCG ACCTGCCGCCGTTCGAGCGCTGGCTGCTGCCCAGCTTCGATCCGCTCAAACCGGCGCCCGCGCCGGAGCCGCTGCCCGAAGTGGAGCCGGAGCCGGAAGT CCAGGCCAGCATCGAGGAAGTGCCGGTCGAGGCGGTGCAGCCGATCACCCTCGAAGAGCTGGAGGCCATCCGTCAGGAGGCCTACAACGAAGGCTTTTCC ACGGGCGAGAAGGACGGCTTCCACGCCGGCCAGTTGCGCGCCCGCCAGGAGGCGGAGGCCCGCCTGAACGAGCAGCTGGCGCGCCTGGAACAGTTGATGG GTCACCTGCTGGAGCCCATCGCCGAGCAGGACCAGGCGCTGGAGCTGGCGCTGGTCGACCTGGTCGCCCATGTCAGCCGCGAGGTCATCCAGCGCGAGCT
|
|
Amino Acid Sequence |
>flagellar motor switch protein FliG
MDQRGRVTVSKLSKVDKAGILLLSLGETDAAQVLRHLGPKEVQKVGVAMAHLGNVHREQVEEVLSEFIVMVGEQTGLGVGTDGYIRKMLTQALGEDKAGS LIDRILLGGSTSGLDSLKWMEPRAVADVIRYEHPQIQAIVVAYLDADQASEVLSHFPHKARLDILLRVSSLNTVQPAALKELNTILEKQFSGNTNTSRAT LGGVKRAADIMNYLDSTIEGPLMDAIRELDEELALEIEDLMFVFENLADIDDRGIQALLREISSDVLTLALKGADENVKEKIFKNMSKRAGELLRDDLES LGPVRVSDVETAQKEILGIARRMAEAGEIVIGPKGAEEMI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|