Pseudomonas tuomuerensis JCM 14085, PT85_RS00680 (rimO)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas tuomuerensis strain JCM 14085 PT85_1, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
AATCAAAGGTTGACAGCCATCCTTCGGCGCGTAGAATGGCCGGCGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTTGGTTC AAATCCAGCTCCCGCAACCAGAATCACGAAGAAAGGCCACTCAAATCGAGTGGCCTTTTTCGTTTCAGCACCCGGAAACGTGGTTGGCGGCTGATTTTAA AACTATTGATTGACAGCCTCTTATTAATAAGTAGAATGGCCGGCGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTAGGTTC AAATCCTGCTCCCGCAACCAGAATCACGCAGAAAGGCCACTCAATCGAGTGGCCTTTTTCGTTTGCGCGCGATTCACCGCATGGGCCTGGCCGCTCAGGA AAAAAACCGTGATTCCGTCTGTTCAGGTTTCCAACCTGCCGCTAAAATCGCGCACTTTTTGATCAGAGGCGCCCGTCAGCGCCACAGAGGTTTCACCCGC
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| DNA Sequence for Gene |
>PT85_RS00680
|rimO
ATGTCCAGCACCTCCACGCCCAAAGTCGGCTTCGTGAGCCTTGGTTGCCCGAAAGCAACCGTCGATAGCGAACGCATCCTTACCCAGCTGCGCATGGAAG GGTACGAGATCGTGCCCACCTACGAAGACGCCGACGTGGTGGTGGTCAACACCTGCGGCTTCATCGACAGTGCCAAGGCCGAGTCGCTGGACACCATCGG CGAGGCGATTGCCGAGAACGGCAAGGTGATCGTCACCGGCTGCATGGGCGTCAACGAGGACAGCATTCGCAACGTGCACCCCAGCGTGCTGGCCGTCACC GGTCCGCAGCAGTACGAGCAGGTGGTCAATGCCGTGCACGAGGTGATCCCGCCGAAGAAGGACCACGATCCGTTCGTCGACCTGGTGCCGCCGCAGGGCA TCAAGCTCACCCCGCGCCACTACGCCTATCTGAAGATTTCCGAAGGCTGCAACCACAGCTGCAGCTTCTGCATCATCCCGTCCATGCGCGGCAAGCTGGT CAGCCGCCCGGTGGGCGATGTGCTGTCCGAGGCGCAGCGCCTGGTCAAGGCCGGCGTCAAGGAGATCCTGGTGATTTCCCAGGACACCAGCGCCTACGGC GTGGACCTCAAGTACAAGACCGACTTCTGGGACGGCCGCCCGGTGAAGACCCGCATGCTCGAGCTGTGCGAGGCGCTTTCGGCGATGGGCGTGTGGGTGC GCCTGCATTACGTCTACCCGTACCCGAACGTCGACGACGTGATCCCGCTGATGGCCGCCGGCAAGCTGCTGCCCTACCTGGATATCCCCTTCCAGCACGC CAGCCCGAAGGTGCTCAAGGCCATGAAGCGCCCGGCGTTCGAGGACAAGACCCTGGCGCGCATCAAGGCCTGGCGCGAGATCTGCCCCGAGCTGACCATC CGCTCCACCTTTATCGTCGGCTTCCCCGGCGAGACCGAGGAAGACTTCCAGTACCTGCTCGACTGGCTGACCGAAGCCCAGCTCGACCGTGTTGGCTGCT TCCAGTACTCGCCCGTGGAAGGCGCGCCAGCCGAGGAACTGGGCCTGGAGCCGGTGCCGGACGAGGTCAAGCAGGAGCGCTGGGAGCGCTTCATGGCGCA CCAGCAGGCAATCTCCGCCGCACGCCTGCAACGCAAGATCGGCACCGAGATCGAGGTGCTGGTCGATGAGGTCGATCATGAAGGCGCGGTGGCGCGCTCC TGGGCCGACGCGCCGGAAATCGATGGCAGCGTGTTCATCGCCGACCCGACCCTCAAGCCCGGCGACAAGGTGCGCGTACGGGTGGTCGATGCTGATGAAT ACGACCTGTGGGCCGAGCGAATCTAA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
GCGTCGCCGCTACAAGGAAGCCCCGCCTGTGCGGGGCTTTTTCATGGGCAATCGCGCGCATTAGGATTGCCTCTGACCATCCGCGAATTGCTGTGACCGG GGTCCGCCGACGTAGAATTCGCCCTGATCCCCGACCGGAACTCTCCATGAACACGCCTTATCGCCGCGAAGGCGACACCTGGCAGATCGACCTGCGCCTG GATCGCCTGCAACAGCTGGCCGATACGCGCGATCCGTCGCCCTTCAGCCGGCGTGACCTGGCCCCGGACGCCGAACGCTACATCCTCGACGCCTGCCGCG AGCTGCCGGCGCATGAACCGCTGGCCCTGAACCTCTGGCTGCCCTCCCACGAGCTGTCCGCCGAAACTGCAGAACGCGCGCGCCACACCGTGTGCTTCCA CTTCGCCTGGCAAGCCGAGAACAGCCAGCGCCGCCTGCGCGAGCACCTGCGCATGGCCCACCGCACCACCCTGCTGGGCCTGTGTTTCATGGCCGTGTGC
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| Amino Acid Sequence |
>ribosomal protein S12 methylthiotransferase
MSSTSTPKVGFVSLGCPKATVDSERILTQLRMEGYEIVPTYEDADVVVVNTCGFIDSAKAESLDTIGEAIAENGKVIVTGCMGVNEDSIRNVHPSVLAVT GPQQYEQVVNAVHEVIPPKKDHDPFVDLVPPQGIKLTPRHYAYLKISEGCNHSCSFCIIPSMRGKLVSRPVGDVLSEAQRLVKAGVKEILVISQDTSAYG VDLKYKTDFWDGRPVKTRMLELCEALSAMGVWVRLHYVYPYPNVDDVIPLMAAGKLLPYLDIPFQHASPKVLKAMKRPAFEDKTLARIKAWREICPELTI RSTFIVGFPGETEEDFQYLLDWLTEAQLDRVGCFQYSPVEGAPAEELGLEPVPDEVKQERWERFMAHQQAISAARLQRKIGTEIEVLVDEVDHEGAVARS WADAPEIDGSVFIADPTLKPGDKVRVRVVDADEYDLWAERI
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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