Pseudomonas tuomuerensis JCM 14085, PT85_RS00460

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00267 duf1_3 IPR000160 GGDEF domain 433 605 1.6E-57
CDD cd01949 GGDEF IPR000160 GGDEF domain 445 598 3.47473E-60
CDD cd06225 HAMP - - 291 314 2.85101E-4
Pfam PF00672 HAMP domain IPR003660 HAMP domain 270 314 4.5E-6
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 443 601 3.6E-42
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 449 602 7.85E-47
SMART SM00091 pas_2 IPR000014 PAS domain 319 385 1.9E-9
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 317 440 1.3E-16
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 308 430 5.89E-23
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 438 604 9.6E-43
Gene3D G3DSA:3.30.450.20 PAS domain - - 316 434 1.8E-21
Pfam PF08448 PAS fold IPR013656 PAS fold-4 325 434 1.0E-10
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 444 598 2.3E-44
CDD cd00130 PAS IPR000014 PAS domain 328 430 1.55229E-14
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 77 598 4.7E-77
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 437 605 1.4E-55

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.