Pseudomonas taetrolens DSM 21104, TU78_RS20150
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 9_245905_45.4182, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CTGGTGTTGGGGATTCTCTACGAGAGTTACATCCACCCGCTGACCATTCTGTCGACATTGCCGTCGGCCGGGGTGGGCGCCTTGCTCAGCATCTACCTGA CGGGAGGCGAGTTCAGCCTGATCTCACTGCTCGGCCTGTTCCTGCTGATCGGCGTGGTGAAGAAGAACGCAATCTTGATGATCGATCTTGCACTGCAACT CGAGCGGCATTCGGGCCTTGCTCCCGAGGCTTCGATCCGCAGCGCGTGCCTGCAACGTTTGCGGCCGATTCTGATGACCACCCTGGCAGCCATTCTGGGG GCCTTGCCCTTGATGCTCAGCACTGCAGAAGGCGCGGAAATGCGTCAGCCTCTGGGCCTGACCATCATTGGCGGTCTGATCTTCAGCCAGATCCTGACCC TTTACACCACTCCGGTGGTTTACCTCTATCTCGATCGCACACGCCATCGCTTCAACAAATGGCGCGGTGTGCGCACTGATGCTGCTCTGGAAACTCCGCT
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| DNA Sequence for Gene |
>TU78_RS20150
ATGACCTCTCGTTTGCTAAACCTTGCTCCGGCACTGTCGTCCCAACGCTGGGCCCTGGCCCGAGGCTCGCGTCTGCTGGGGCTGGTGATATCAGGCTTGT TGCTCAGCGCGTGCGCGATTGGCCCGGACTACCAGCGGCCCGAACTCGCGGCTCCGGTGCAATACAAGGAAGCTGCCGGCTGGACCCAGGCCAACCCGAG TGATGCATTGGCCCGCGGCGCCTGGTGGGAGCTGTACGGTGATCAGCAGCTTAATGGCCTGGTGGAGCAGCTCAACCGCTCCAACCAGACCATTGCCCAA TCCGAAGCCCAGTTTCGTCAGGCCCAGGCGTTGGTGCGCACTGCACGCGGGGCTTTTTTCCCGAGTGCTGACTTGAGCGTGGGTAAAACCCGCTCCAGTC AGGGCACCGGCAGCAGCAGCTCAAGCTTGAGCAGTTCCAGCAGCGGGATTCGTGACACCTACAATGCACAGGTTGGTGTCAGCTGGGAGGCCGATGTCTG GGGCAAGCTGCGGCGCGGCCTCGAAGCCAACGAAGCCACCGCTGAAGCCAGCCTGGCCGACCTGGCGGCCATGCGCCTGAGCCAGCAGTCCGAGTTGGTG CAGAACTACCTGCAGTTACGCGTCATCGATGAGCAAAAACGCTTACTGGAGGCCACGGTCGAGGCCTATCAGCGCTCACTGAAAATGACGGACAACCAGT ACCGAGCCGGGATTTCCGGCAAGGATTCCGTGGCCCAGGCACAAACCCAATTGCGTAATACCCAGGCCAGCCTGATCGACTTGATCTGGCAGCGGGCCCA GTTTGAAAATGCGATTGCGGTGCTGACCGGACAAGCGCCTTCGGCCTTCAGCCTGGCCGAAGTCGATACCGTACCTGCGTTGCCGCAGATACCCGTGAGC CTGCCATCGCAATTGCTCGAACGTCGCCCGGACATCGCCTCGGCCGAGCGCTCGATCATCGCCGCCAATGCCAATATCGGGGTTGCCAAGGCCGCCTATT ACCCGGATTTCAGCCTGAGCCTTTCGGGCGGCTACAGCAGCAGTACCTATGACGACTGGATCAGCGTGCCCAACCGTTTCTGGTCGGTAGGGCCGAAAAT TGCTTTGCCACTGTTCGATGGCGGCCAACGCTCTGCCGAGGTCGACCGTAACGAAGCGCTGTATGACCAGACGGTGGCAAAGTACCGGCAGACCGTACTC GATGGTTTTCGCGAAGTGGAAAACTACCTGGTGCAGTTGAAGGTACTGGGGGACGAATCAGTGGTGCAGGAACAGGCGCTGGAGTCGGCCCGTGAGTCAT TGCGCCTGACCAGCAATCAGTACAAGGCCGGCCTGATTGCCTACCTCGACGTCGTCTCGGTGCAAACCACCGCACTCACCACCGAACGTAGCGTGCTCAA CTTGCTGCAAAGCCGGCTGATTGCCAGCGTGCAACTGATCGCTGCACTGGGTGGTGGCTGGGACGGCAATACCGACCTGAGTGCCAATGAAAATAACCGC CGCCGAACGTCAACGGCCCCGGATTCGCAATGA
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CCCTGTAGCCGCTGCCGAAGGCTGCGAAAAGGAGGGGCCGCGCTATCCATCGCAGCCTGCGGCAGCGGTTACAAATAAGGACGATCCGTAGCAGCGGTCG AGCGAAGCGAGGCCGCGTCCGGCGACGCAGCCGTCGCAAAAACCCTGGGTATTTTCTGCGTGTCGACGCGTGCAGGTTCAGAGGTAGAAGCTGAACCGGT CCTTGCCATTATGTTTGGAGGCGTATAACGCCTTGTCAGCCTTGGCCAGCGCCTGGTTGAGGCTTTCGTCATCGTCGAGGCGGGTGAGCCCGATGCTGAC GGTGACCGGATGTTCGTGCGGATCCTCGCGCACTTGCCGGCACAGGGTGGTCATCAGGGCCTCCACATCGGTACGACGCACGCCTGACAAATACACGGCA AATTCCTCTCCGCCCAGGCGGGCATATTGATGCCCGGCCATCACCGATTTGATACAGACGGCGGTGCGTACCAGCACTTCATCCCCCACATCGTGGCCAT
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| Amino Acid Sequence |
>RND transporter
MTSRLLNLAPALSSQRWALARGSRLLGLVISGLLLSACAIGPDYQRPELAAPVQYKEAAGWTQANPSDALARGAWWELYGDQQLNGLVEQLNRSNQTIAQ SEAQFRQAQALVRTARGAFFPSADLSVGKTRSSQGTGSSSSSLSSSSSGIRDTYNAQVGVSWEADVWGKLRRGLEANEATAEASLADLAAMRLSQQSELV QNYLQLRVIDEQKRLLEATVEAYQRSLKMTDNQYRAGISGKDSVAQAQTQLRNTQASLIDLIWQRAQFENAIAVLTGQAPSAFSLAEVDTVPALPQIPVS LPSQLLERRPDIASAERSIIAANANIGVAKAAYYPDFSLSLSGGYSSSTYDDWISVPNRFWSVGPKIALPLFDGGQRSAEVDRNEALYDQTVAKYRQTVL DGFREVENYLVQLKVLGDESVVQEQALESARESLRLTSNQYKAGLIAYLDVVSVQTTALTTERSVLNLLQSRLIASVQLIAALGGGWDGNTDLSANENNR RRTSTAPDSQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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