Pseudomonas taetrolens DSM 21104, TU78_RS20035
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 9_245905_45.4182, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
GTCATGATCGGAGCACTGATGGCAGCCCTTGAACAGCGCTCGATGGTGTCACTGGACGTGATCAAGGACCGGGGGCTGTTCCGCGAGAACAGCCAGGGCC AGATTGAAAACATCTACAGCCTCAAAATCATCAACAAGACCCAACAAACGCAGCACTACCGTGTGCAACTGCAGGACGCTGAAGGTTTCCAGCTGCAAGG TAAAACCGGACTGACCCTGGCCCCGGGTGAAATCATCGACGTGCCGGTGTCCGTCGCCCTGCTCGCCGAGCGCCCGACCAGCAGCTCGCAGACCATTACC TTCGAAGTGATCGATACCGACGAGCCAAATGTGCGCAGTGTGGCCAAGAGCCGTTTTGTTGCTCCGCTCAATCGTTGAATGATAAATCCCTGCAGGTGCG GCCTTGCTCGCGATAGCATCGCCCACGGTCACCCCGACAGACCGTGCCGCAGTTACCGCGAGCAACCTCTCGCCTACAGGATCAGCCGAGCCTTATCCCC
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| DNA Sequence for Gene |
>TU78_RS20035
ATGAAACGCTACGAAAAATTCGCCGATGATATTGCTGAGCTGATCCGCTCCGGGGTACTCGGTCCGGGGCAACGCGTGCCATCCGTGCGCTATGCCAGTC AGACCTATGGCGTCAGCCCGTCCACCGTGTTTCAGGCGTATTACCTGCTGGAGCGCCGTGGCCTGATTCGGGCCAAACCGCGCTCCGGCTACTTCGTCAA TGTGAATACCCCCAGCCCGTTTTCCGAGCCAGTATTCAGCAGCCATGCGACCGAACCCACTCAGGTAGATGTCAGCGCGCTGGTGTTTTCGGTGCTGGAC TCGATCAAGGATCCGCACACCGTGCCGTTCGGTTCGGCATTCCCCAGCCCGATGCTGTTCCCGCTGCAGCGCCTGGCGCGCTCGATGGCCACGGCCAGCC GTGACATGGACCCGCGTATGGTGGTGACGGACATGTCGCCCGGCAATCCGCAGTTGCGCCGGCAAATTGCCCTGCGCTACATGGTCGGCGGGCTGATGCT GCCGATGGAAGAACTGCTGATCACCAACGGTGCGCTGGAGGCCCTGAACCTGTGCCTGCAGGCCGTGACCGAACCCGGTGACTGGGTGGCCATCGAAGCC CCAGCGTTTTATGCATGTCTGCAAGTGCTGGAACGGCTCAAGCTCAAGGCCGTCGAGATTCCCGTCCACCCACGTGACGGTATTGACCTCGGCGTGTTGG CGCAAACCCTGGAACGGCACCCGATCAAAGCGGTGTGGTGCATGACCAACTTTCAGAACCCGATCGGCGCGAGCCTGCCCGAAGCCCGTAAAAAATCCCT GGTCGAGCTGTTGCGCGAGCATCAGGTGCCGCTGATTGAGGACGATGTCTACGCCGAGCTGTATTACGGCCAGCATGCACCGAAACCGGCCAAGGCGTTT GATACCGAGGGGCTGGTGATGCATTGCGGTTCGTTTGCCAAAAGCCTGGCGCCCGGTTATCGGATTGGCTGGGTGGCGGCAGGCCGTTACGCACAAAAGA TCGAGCGTCTGAAACTCATGACCTCACTGTGCGCCTCAATGCCCGCCCAGGCCGCCATCGCCGACTACTTGCAACACGGTGGCTATGACCGCCACTTGCG CAAGCTGCGTGATGCACTGGAAGAACAACAAAGCGCGATGCTGGCGGCCATTGCCCGTTACTTCCCTGCCCAGACCCGAGTCAGCCAGCCCGCGGGCGGC TACTTTCTGTGGCTCGAACTGCCGGAGCACGTCGACTCGCTCAAGCTGTTCCAGATGGCCCTGGCCCAGGGCATCAGCATTGCACCGGGCCCCATCTTCT GCGCCACTCAGCGTTTTCGAAACTGCATTCGCCTGAACTACGGCAGCCCTTGGGACGCGGTGAGCGAAAAGGCCATGGAAACCCTGGGCAAGATCATCCG CTCATTTTAG
BLASTN Search
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DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
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| DNA Sequence Downstream of Gene |
CGCCCTCGCAGCCTTCGGCAGCGGCTACAGGATTGCTCGTAGCCGTTGCCGAGTGAATCGTTACGACCCGGACGCGGCTAGCGCTTGTTCGCCACGGTGT TCGACGCCGCCAGCATGGCTTTCAGTAGCACGGCACAGCCGGCACCGAGGTCTTTGGGGTCGGCGTTTTCGATTTCGTTGTGGCTGATGCCGCCTTCACA AGGCACAAAAATCATGCCTGCCGGCCCGAGTTCGGCGAGGAAAATCGCGTCGTGCCCTGCCCCGCTGACAATATCCATATTGGATAACCCAAGCTCGTTG GCGGCTTCGCGCACGGCGTTGACGCAATCCGGGTTGAAGTACAGCGGCGGGAAATCCGCAGTGGGCGTGAGTTCGAAACTCAAGCCGTGCTGTTCACAGG TGGCTTCGATCACTGCGCGGACTTCTGCAATCATCGAGTCCAGCCGCTCCGGGAGCAAATGGCGAAAATCCAGGGTCATGCGCACTTCACCCGGGATCAC
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| Amino Acid Sequence |
>GntR family transcriptional regulator
MKRYEKFADDIAELIRSGVLGPGQRVPSVRYASQTYGVSPSTVFQAYYLLERRGLIRAKPRSGYFVNVNTPSPFSEPVFSSHATEPTQVDVSALVFSVLD SIKDPHTVPFGSAFPSPMLFPLQRLARSMATASRDMDPRMVVTDMSPGNPQLRRQIALRYMVGGLMLPMEELLITNGALEALNLCLQAVTEPGDWVAIEA PAFYACLQVLERLKLKAVEIPVHPRDGIDLGVLAQTLERHPIKAVWCMTNFQNPIGASLPEARKKSLVELLREHQVPLIEDDVYAELYYGQHAPKPAKAF DTEGLVMHCGSFAKSLAPGYRIGWVAAGRYAQKIERLKLMTSLCASMPAQAAIADYLQHGGYDRHLRKLRDALEEQQSAMLAAIARYFPAQTRVSQPAGG YFLWLELPEHVDSLKLFQMALAQGISIAPGPIFCATQRFRNCIRLNYGSPWDAVSEKAMETLGKIIRSF
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
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