Pseudomonas taetrolens DSM 21104, TU78_RS16080
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0044237 | cellular metabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:PF01008
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
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| Biological Process | GO:0044249 | cellular biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00524
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
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Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:1.20.120.420:FF:000008 | Methylthioribose-1-phosphate isomerase | - | - | 10 | 158 | 2.6E-58 |
| Gene3D | G3DSA:1.20.120.420 | - | IPR027363 | Methylthioribose-1-phosphate isomerase, N-terminal | 10 | 158 | 1.5E-39 |
| Hamap | MF_01678 | Putative methylthioribose-1-phosphate isomerase [mtnA]. | IPR005251 | Methylthioribose-1-phosphate isomerase | 11 | 351 | 66.337357 |
| SUPERFAMILY | SSF100950 | NagB/RpiA/CoA transferase-like | IPR037171 | NagB/RpiA transferase-like | 9 | 343 | 1.42E-106 |
| Coils | Coil | Coil | - | - | 106 | 126 | - |
| FunFam | G3DSA:3.40.50.10470:FF:000006 | Methylthioribose-1-phosphate isomerase | - | - | 158 | 354 | 4.0E-83 |
| NCBIfam | TIGR00512 | JCVI: S-methyl-5-thioribose-1-phosphate isomerase | IPR005251 | Methylthioribose-1-phosphate isomerase | 12 | 341 | 7.3E-129 |
| Pfam | PF01008 | Initiation factor 2 subunit family | IPR000649 | Initiation factor 2B-related | 53 | 341 | 3.0E-69 |
| NCBIfam | TIGR00524 | JCVI: S-methyl-5-thioribose-1-phosphate isomerase | IPR011559 | Initiation factor 2B alpha/beta/delta | 39 | 341 | 1.1E-96 |
| PANTHER | PTHR43475 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE | - | - | 8 | 348 | 3.8E-109 |
| Gene3D | G3DSA:3.40.50.10470 | - | IPR042529 | Initiation factor 2B-like, C-terminal | 159 | 356 | 9.4E-70 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.