Pseudomonas taetrolens DSM 21104, TU78_RS15445
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Sequence Data
| Strain | Pseudomonas taetrolens strain DSM 21104 6_420177_45.4403, whole genome shotgun sequence. [Details] | |
| DNA Sequence Upstream of Gene |
CCAGGGCAAACTGCTGGATAATGTGTGGCCAGCGTTAAAACCCCTGCTTTGATGCTTTTCTAGTTGCAGTGTTTCGGCTAAGGTGGCGCCCCCCCGATTT GGAGCCCCCGATGTCGCGTCCTGCCTGGTCTTTATACGCCTATCAACTGATCGAGCCCGATGAGCAGCTCGATTTGTTCGCCTGCCAGGAGGTTCGGGTA CATTTGGTGACGCGTCAATTGGAGCTGGGAGGCACGATCGATCGCACCTTGTGCGGTTCGTTGTTGCCCGCGCAGCCGCGTTGGTCGGATGTCACGCGCA AAGTTTTCCAGGATCATCGGTTGTGTCCGCTGTGCCGGGCGATTATCGAATCGCAGCGCCGTGGAACCGAGCCGATCTGGCCGGAACTGCGCTTTGAATT ATGATGCAATTGATCTGACGCTTTAGCGCCTCCCGGTGCCTGTGGGCGAGGTGTACACTCGCTCTTTTATCCCCCGTTGATTATGCGAAGGATGTTCCGG
|
|
| DNA Sequence for Gene |
>TU78_RS15445
ATGTTGCCGCGCCTACCTGCCGTCACCCGCTACCTGTCAGTTGCCGCACTGTGTGTTGCGGGTCCCGTTGCTGCGCTTGAATTTCCGCTGCCGCCGCCTG GTGAGGATGTCGTCGGCCAGGTGCAGGTGATCAAGGCTCAATACGAAGACTCATTCGCTGATCTGGGTGAAACGTACGAGTTGGGGTACTCGGAAATGGT CGCGGCCAACCCGGGGGTAGACGCCTGGCTGCCGGTGAAGACCAAGGGTGAAGAGGCCGACGTGGTGTTGCCGACCCAGTTTGTCCTGCCGCCGGGCAAA CGCGAAGGGATCGTGATCAACCTCGCCGAGTACCGCCTGTACTACTATCCGAAAGGCCGGGATGTGGTCTACACATTCCCGCTGGGCATTGGCCGTGAAG GCTGGGGTTCGCCTGTAGGGACTACCCGGATCGCCGCCAAGACCCCTAATCCGACCTGGACGCCTCCGGCTTCGATCAAGGCCGAACACGCTATGAATGG TGATCCGCTGCCCAACGTCGTGCCCGCGGGGCCGGACAACCCGCTGGGGCCTTTCAAGTTCACCCTGGGGATGCCGGGTTATCTGATCCACGGCTCGAAT GCGAAATTTGGAATCGGTACAGGGACCAGTCATGGCTGCTTCCGCATGTTCAACAAGAACGTACTGGAAATGGCAGACATGGTGCCGGTCGGTACGCCGG TCAGAATCATTAATGAGCCGTACAAGCTCGGCGTGAGCGGTGGCAAGGTTTACCTTGAGCTTCATCAGCCGTTGAATGTCAGCGACGGCTCTCTGGTTGC CAAAGGTGCGCCGTCGGAAGCTTCCGACGAAGAAGTGGCAGAAAGATATGCCGCGGTGGTCAATAAGGTGTTGAATCGCCCCGATCTGAAGATGAATATT CAGATCGACCGGGACAAGGCATTGGCGGTTGTTCGTGCGGAGACTGGAGTGCCCACCGAAGTGGGGGTCGACACCACCATAACATCCGGAGAGTCGCTGG ACTACGTGCAGTAA
BLASTN Search
|
DIAMOND BLASTX Search (DIAMOND is faster than BLASTX)
|
|
| DNA Sequence Downstream of Gene |
GCATGGACTAAAAAAACCGCCGCGGTTAATACCCGCGGCGGTTTTTTATTGCCTGCCGACTGAGTGACGGGCAATAAAAAAGCCGCCCCATAAATGGGGC GGCTTGGTAACAATCCCGAAGGACTATTACTTGCGGCTTGCTTTTTCAAGCATGCGCAGAGCGCGCTCGTTTGCTTCATCAGCAGTCTGCTGTGCTTTTT GAGCAGCAGCCAGAGCTTCATCAGCTTTACGGTAGGCTTCGTCAGCACGAGCCTGGGAGCGAGCTGCTGCGTCTTCAGTTGCAGTCAGACGGGCTTCAGT TTCTTTAGATACGCTGCTGCAACCGGTAGCCAGAACTGCGGCCAATGCCAGAGCAGAGAATTTCAGAACGTTGTTCATCGTGTTCCCCTTCAAGGACTTT CTAATTGAAGCTGCTCCTTCAACGTGAGGATACAGCCGGCGTACATAGTACCCATTACTTGTAGTAAGTAAACTGACCGAGCGCAAGAACCAAAAAAAAT
|
|
| Amino Acid Sequence |
>ErfK/YbiS/YcfS/YnhG family protein
MLPRLPAVTRYLSVAALCVAGPVAALEFPLPPPGEDVVGQVQVIKAQYEDSFADLGETYELGYSEMVAANPGVDAWLPVKTKGEEADVVLPTQFVLPPGK REGIVINLAEYRLYYYPKGRDVVYTFPLGIGREGWGSPVGTTRIAAKTPNPTWTPPASIKAEHAMNGDPLPNVVPAGPDNPLGPFKFTLGMPGYLIHGSN AKFGIGTGTSHGCFRMFNKNVLEMADMVPVGTPVRIINEPYKLGVSGGKVYLELHQPLNVSDGSLVAKGAPSEASDEEVAERYAAVVNKVLNRPDLKMNI QIDRDKALAVVRAETGVPTEVGVDTTITSGESLDYVQ
BLASTP |
DIAMOND BLASTP (DIAMOND is faster than BLASTP)
Search for conserved domains in this protein at NCBI CDD site
|